View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9661A_low_10 (Length: 441)
Name: NF9661A_low_10
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 30888162 - 30888582
Alignment:
| Q |
7 |
acaatgaattaccaaaattcacgataaacaacaattgaatttatcaaatcaccacagttttattatttatannnnnnnnagatagatggaataacaatag |
106 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
30888162 |
acaatgaactatcaaaattcacgataaacaacaattaaatttatcaaatcaccatagttttattatttatattttttttagatagatgaaataacaatag |
30888261 |
T |
|
| Q |
107 |
tgatnnnnnnnnctcaaacaaaatggttttaaaatttttgtagaagttgtgcacattatttcttctttttatcatacaaaatggactactatttctcttc |
206 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30888262 |
tgataaaaaaaactcaaacaaaatggttttaaaacttttgtagaagttgtgcacattatttcttctttttatcatacaaaatggactactatttctcttc |
30888361 |
T |
|
| Q |
207 |
attctcgtatcattgtcttaaccatcttaattcttctgtgattcgtatcataaaaatagacatttcaacaaccatatcccatgtataaatcatttataca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30888362 |
attctcgtatcattgtcttaaccatcttaattcttctgtgattcgtatcataaaaatagacatttcaacaaccatatcccatgtataaatcatttataca |
30888461 |
T |
|
| Q |
307 |
ttttgtctaattattattataataattgacatccatcaaccaatgataagaaatcgtacaaccatgccgacatcaaatgaataaaacatcacctcttctt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30888462 |
ttttgtctaattattattataataattgacatccatcaaccaatgataagaaatcgtacaaccatgccgacatcaaatgaataaaacatcacctcttctt |
30888561 |
T |
|
| Q |
407 |
tgccacaagatctgatgtcca |
427 |
Q |
| |
|
||||||||||| | ||||||| |
|
|
| T |
30888562 |
tgccacaagatttcatgtcca |
30888582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University