View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9661A_low_100 (Length: 260)
Name: NF9661A_low_100
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_100 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 6916178 - 6915922
Alignment:
| Q |
1 |
gagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916178 |
gagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctg |
6916079 |
T |
|
| Q |
101 |
acccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916078 |
acccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttgccctccagattgcttcttatgtaaataatcaaaatcagcacgttgagt |
6915979 |
T |
|
| Q |
201 |
aacagtttctctgaagtttacccggggctttccaactgtagcatcaacaccaaactc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
6915978 |
aacagtttctctgaagtttacccggggctttccaactgtagcatcaaccccatactc |
6915922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 127 - 248
Target Start/End: Original strand, 15039269 - 15039390
Alignment:
| Q |
127 |
ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg |
226 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15039269 |
ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg |
15039368 |
T |
|
| Q |
227 |
gctttccaactgtagcatcaac |
248 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15039369 |
gctttccaactgtagcatcaac |
15039390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 15038314 - 15038438
Alignment:
| Q |
1 |
gagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
15038314 |
gagttggcagcttctataaaacctttctcaattgcagcgaaaaaatttgatggaatagcttgaccaacaagcatgttttcaaattcaaacttagtttctg |
15038413 |
T |
|
| Q |
101 |
acccagcaggaagtggttcaatata |
125 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
15038414 |
acccagcagggagtggttcaatata |
15038438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University