View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_102 (Length: 260)
Name: NF9661A_low_102
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_102 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 37707392 - 37707133
Alignment:
| Q |
1 |
ttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37707392 |
ttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgattctggtgaaaacccacaaga |
37707293 |
T |
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| Q |
101 |
tatttcacagtataatctactaatacccgtgtctaattcacattttgtaggattggtactctgcaagaaatgtgcaggttctggctattcccgaaggtta |
200 |
Q |
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| T |
37707292 |
tatttcacggtataatctactaatacccgtgtctaattcacattttgtaggattggtactctgcaagaaatgtgcaggttctggctattcccgaaggtta |
37707193 |
T |
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| Q |
201 |
tgagctttgaattcagctttatatctcaaatcttcttcctctgacatccgcaagatcttg |
260 |
Q |
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| T |
37707192 |
tgagctttgaattcagctttatatctcaaatcttcttcctctgacatccgcaagatcttg |
37707133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 37443172 - 37442912
Alignment:
| Q |
1 |
ttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaaga |
100 |
Q |
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||||||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37443172 |
ttaaatagtggctctagtgtcactgtagcattgtagcttagcaaaatttgaacaaagtgttattttctgtgatctgcgattctggtgaaaaccaacaaga |
37443073 |
T |
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| Q |
101 |
tattt-cacagtataatctactaatacccgtgtctaattcacattttgtaggattggtactctgcaagaaatgtgcaggttctggctattcccgaaggtt |
199 |
Q |
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| T |
37443072 |
tattttcatggtataatctactaatacccgtgtctaattcacattttgtaggattggtactctgcaagaaatgtgcaggttctggctattcccgaaggtt |
37442973 |
T |
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| Q |
200 |
atgagctttgaattcagctttatatctcaaatcttcttcctctgacatccgcaagatcttg |
260 |
Q |
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| T |
37442972 |
atgagctttgaattcagccttatagcttaaatcttcttcccctgacatctgcaagatcttg |
37442912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 34925316 - 34925263
Alignment:
| Q |
24 |
tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgc |
77 |
Q |
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| T |
34925316 |
tatagcattgtagcatagcagaatttgaacaaactgctattttccacgatctgc |
34925263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 11501553 - 11501488
Alignment:
| Q |
3 |
aaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttcc |
68 |
Q |
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| T |
11501553 |
aaatagtggctatagtagcattatagcactctagcatagtggaatttgaacaaactgttattttcc |
11501488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 21901327 - 21901372
Alignment:
| Q |
23 |
ttatagcattgtagcttagcagaatttgaacaaagtgttattttcc |
68 |
Q |
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| T |
21901327 |
ttataacattgtagcgtagcagaatttaaacaaagtgctattttcc |
21901372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 38434185 - 38434242
Alignment:
| Q |
24 |
tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgatt |
81 |
Q |
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| T |
38434185 |
tatagcactgtaacatagcagaatttgaacaaactgctattttccgtgttctgcgatt |
38434242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 10363462 - 10363499
Alignment:
| Q |
44 |
gaatttgaacaaagtgttattttccatgatctgcgatt |
81 |
Q |
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| T |
10363462 |
gaatttgaacaaaatgctattttccatgatctgcgatt |
10363499 |
T |
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