View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_11 (Length: 434)
Name: NF9661A_low_11
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 37821677 - 37821240
Alignment:
| Q |
1 |
tggtgttgcatcttaacttctgtgcacttgagactgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821677 |
tggtgttgcatcttaacttctgtgcacttgagactgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttca |
37821578 |
T |
|
| Q |
101 |
gttggtgatttagcatgtgctataatactggccaaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821577 |
gttggtgatttagcatgtgctataatactggccaaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttg |
37821478 |
T |
|
| Q |
201 |
atactgtaatactattcatctcttacatatataatt------------atcatacataactatagcattttattaatgatatatgttaagagcaattcca |
288 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
37821477 |
atactgtaatactattcatctcttacatatataattatcacaccctttatcatacataactatagcattttaataatg--atatgttaagagcaattcca |
37821380 |
T |
|
| Q |
289 |
aaactcatggtaatgtgatgtgactgctggcctcacaatttcttccgtagtactcgtatataaaagtccacttagtgggcattccactaaccactctaca |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37821379 |
aaactcatggtaatgtgatgtgactgctggcctcacaatttcttccgtagtactcgtatataaaagtccacttagtggccattccactaaccactctaca |
37821280 |
T |
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| Q |
389 |
aagttttaaatttttggtgtcattggtctcctatcatttc |
428 |
Q |
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| T |
37821279 |
aagttttaaatttttggtgtcattggtctcctatcatttc |
37821240 |
T |
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