View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_111 (Length: 251)

Name: NF9661A_low_111
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_111
NF9661A_low_111
[»] chr8 (10 HSPs)
chr8 (17-200)||(61451-61634)
chr8 (17-197)||(1365829-1366009)
chr8 (70-200)||(39255673-39255803)
chr8 (70-198)||(44751607-44751735)
chr8 (82-136)||(26492093-26492147)
chr8 (70-107)||(12351828-12351865)
chr8 (144-197)||(39254787-39254840)
chr8 (157-197)||(62248-62288)
chr8 (156-198)||(41859309-41859351)
chr8 (157-197)||(44752578-44752618)
[»] chr4 (18 HSPs)
chr4 (18-198)||(47198604-47198784)
chr4 (17-197)||(28683508-28683687)
chr4 (70-198)||(55159988-55160115)
chr4 (144-197)||(25371540-25371593)
chr4 (71-154)||(43737636-43737719)
chr4 (144-191)||(55159186-55159233)
chr4 (157-199)||(28684240-28684282)
chr4 (156-195)||(3848585-3848624)
chr4 (135-190)||(37275095-37275150)
chr4 (156-197)||(36865724-36865765)
chr4 (149-197)||(38694954-38695002)
chr4 (147-198)||(42544487-42544538)
chr4 (156-198)||(11417686-11417728)
chr4 (156-198)||(29651339-29651381)
chr4 (157-199)||(47199403-47199445)
chr4 (156-197)||(11417944-11417985)
chr4 (156-192)||(3847891-3847927)
chr4 (157-197)||(10424123-10424163)
[»] chr5 (9 HSPs)
chr5 (17-197)||(13655528-13655708)
chr5 (71-136)||(4909593-4909658)
chr5 (144-198)||(13654932-13654986)
chr5 (156-199)||(8204118-8204161)
chr5 (149-192)||(33001937-33001980)
chr5 (156-198)||(33002823-33002865)
chr5 (156-197)||(15184024-15184065)
chr5 (163-192)||(39167454-39167483)
chr5 (156-197)||(39950404-39950445)
[»] chr2 (7 HSPs)
chr2 (70-198)||(5276464-5276592)
chr2 (156-201)||(21471013-21471058)
chr2 (165-200)||(45139689-45139724)
chr2 (157-199)||(14574007-14574049)
chr2 (156-197)||(21471961-21472002)
chr2 (149-198)||(37543257-37543306)
chr2 (157-197)||(13134318-13134358)
[»] chr1 (15 HSPs)
chr1 (70-197)||(37874064-37874191)
chr1 (70-198)||(48869768-48869896)
chr1 (70-197)||(35615767-35615893)
chr1 (70-184)||(17496083-17496197)
chr1 (149-201)||(48972445-48972497)
chr1 (163-197)||(8560839-8560873)
chr1 (144-198)||(35616770-35616824)
chr1 (156-198)||(51987826-51987868)
chr1 (156-201)||(51974433-51974478)
chr1 (149-197)||(193850-193898)
chr1 (156-197)||(16270207-16270248)
chr1 (156-197)||(23440872-23440913)
chr1 (156-197)||(51988471-51988512)
chr1 (149-197)||(23440617-23440665)
chr1 (149-197)||(48971705-48971753)
[»] chr3 (11 HSPs)
chr3 (70-197)||(17226968-17227095)
chr3 (144-197)||(17227943-17227996)
chr3 (155-203)||(41755493-41755541)
chr3 (149-192)||(32490195-32490238)
chr3 (156-199)||(36750444-36750487)
chr3 (156-190)||(49757189-49757223)
chr3 (160-197)||(19132563-19132600)
chr3 (149-198)||(44687163-44687212)
chr3 (80-136)||(4486555-4486611)
chr3 (156-192)||(38922748-38922784)
chr3 (149-197)||(38923665-38923713)
[»] chr6 (9 HSPs)
chr6 (70-196)||(9573636-9573762)
chr6 (156-197)||(7531829-7531870)
chr6 (149-197)||(15083318-15083366)
chr6 (156-198)||(7193337-7193379)
chr6 (165-198)||(7532456-7532489)
chr6 (144-197)||(9574566-9574619)
chr6 (156-197)||(33480635-33480676)
chr6 (156-192)||(22582486-22582522)
chr6 (156-192)||(22587317-22587353)
[»] scaffold1037 (1 HSPs)
scaffold1037 (71-192)||(2034-2155)
[»] scaffold1031 (1 HSPs)
scaffold1031 (71-192)||(2152-2273)
[»] chr7 (15 HSPs)
chr7 (156-196)||(42455036-42455076)
chr7 (149-192)||(7677422-7677465)
chr7 (156-200)||(41194510-41194554)
chr7 (87-138)||(23683461-23683512)
chr7 (156-199)||(38778852-38778895)
chr7 (92-138)||(19737901-19737947)
chr7 (156-198)||(37468909-37468951)
chr7 (116-198)||(47331920-47332002)
chr7 (156-197)||(668179-668220)
chr7 (116-201)||(4984805-4984889)
chr7 (156-197)||(17145622-17145663)
chr7 (156-197)||(37469012-37469053)
chr7 (156-197)||(38779570-38779611)
chr7 (116-201)||(45887947-45888032)
chr7 (156-192)||(7677816-7677852)
[»] scaffold0311 (1 HSPs)
scaffold0311 (156-198)||(167-209)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 61634 - 61451
Alignment:
Q  17 ggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgagagactattgtaatagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61634 ggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgagagactattgtaatagt 61535  T
Q  117 gtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacctaa 200  Q
    |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||| |||||||    
T  61534 gtgttctttgtatgatccaatggttagaaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacctaa 61451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 1366009 - 1365829
Alignment:
Q  17 ggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgagagactattgtaatagt 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1366009 ggacaaagataagaaaaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgagagactattgtaacagt 1365910  T
Q  117 gtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||| ||||    
T  1365909 gtgttctttgtatgatccaatggttagaaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 39255673 - 39255803
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 169  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  |||||| |||||||    
T  39255673 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattaggaaagactttcccatggtgggaaaga 39255772  T
Q  170 agtctcctttcccaaattaaatgtcacctaa 200  Q
    |||||| |||||||| ||||||| |||||||    
T  39255773 agtctcatttcccaagttaaatgccacctaa 39255803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 44751735 - 44751607
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 169  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||| | |||||||    
T  44751735 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattaaaaaagactttcccatgatgggaaaga 44751636  T
Q  170 agtctcctttcccaaattaaatgtcacct 198  Q
    ||||||||||||||| ||||||| |||||    
T  44751635 agtctcctttcccaagttaaatgccacct 44751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 26492147 - 26492093
Alignment:
Q  82 ataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaa 136  Q
    |||| ||||||||||||||||||||||||||||||||  ||||| | ||||||||    
T  26492147 ataaaaatctagtgttgagagactattgtaatagtgtactctttatgtgatccaa 26492093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 12351828 - 12351865
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactat 107  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12351828 gaagatagtaagataaaaatctagtgttgagagactat 12351865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 39254840 - 39254787
Alignment:
Q  144 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||||||||   ||||| |||||||||||||||||||||||||||||| ||||    
T  39254840 aaaagactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 39254787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 62248 - 62288
Alignment:
Q  157 atggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  62248 atggtgggaaagaagtctcctttctcaaattaaatgtcacc 62288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 41859351 - 41859309
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  41859351 catggtgggaaagaactctcctttcccaaattaaatggcacct 41859309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 44752578 - 44752618
Alignment:
Q  157 atggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||| |||||||||||||||||||||| ||||||| ||||    
T  44752578 atggtgggaaagaagtctcctttcccaagttaaatgccacc 44752618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 47198784 - 47198604
Alignment:
Q  18 gacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgagagactattgtaatagtg 117  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47198784 gacaaagataagaagaaaaaggtggaaaagaatccaagtttcaatggttagtgaagatagtaagataagaatctagtgttgagagactattgtaatagtg 47198685  T
Q  118 tgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    ||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  47198684 tgttctttgtatgatccaatggttagaaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacct 47198604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 28683687 - 28683508
Alignment:
Q  17 ggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgagagactattgtaatagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28683687 ggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgagagactattgtaatagt 28683588  T
Q  117 gtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    | ||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||||| ||||||||||||| ||||    
T  28683587 gcgttctttgtatgatccaatggttagaaaa-actttttcataatgggaaagaagtctccttccccaaattaaatgccacc 28683508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 55159988 - 55160115
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 169  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||||  |||| |    
T  55159988 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttatatgatccaatgattagaaaagactttcccatggtgagaaa-a 55160086  T
Q  170 agtctcctttcccaaattaaatgtcacct 198  Q
    ||||||||||||||||||||||| |||||    
T  55160087 agtctcctttcccaaattaaatgccacct 55160115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 25371540 - 25371593
Alignment:
Q  144 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  25371540 aaaatactttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 43737719 - 43737636
Alignment:
Q  71 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttt 154  Q
    |||||||||| |||| |||| |||||| |||| |||| ||||||||||||||||| |||||||||||  ||| |||| ||||||    
T  43737719 aagatagtaatataaaaatccagtgttaagaggctatagtaatagtgtgttctttatatgatccaataattataaaacactttt 43737636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 55159233 - 55159186
Alignment:
Q  144 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaat 191  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  55159233 aaaagactttcccatggtaggaaagaagtctcctttcccaaattaaat 55159186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 28684240 - 28684282
Alignment:
Q  157 atggtaggaaagaagtctcctttcccaaattaaatgtcaccta 199  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  28684240 atggtaggaaaaaagtctcctttcccaaattaaatgtcaccta 28684282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 3848585 - 3848624
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtca 195  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  3848585 catggtgggaaagaagtctcctttcccaaattaaatgtca 3848624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 37275150 - 37275095
Alignment:
Q  135 aatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaa 190  Q
    |||||||  |||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  37275150 aatggtttaaaaaaactttctcatggtgggaaagaagtctcctttcccaaattaaa 37275095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 36865724 - 36865765
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  36865724 catggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 38694954 - 38695002
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  38694954 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 42544538 - 42544487
Alignment:
Q  147 agactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||||| |||||| ||||| |||||| ||||||||||||||||| |||||    
T  42544538 agacttttccatggtgggaaaaaagtcttctttcccaaattaaatggcacct 42544487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 11417728 - 11417686
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  11417728 catggtgggaaagaactctcctttcccaaattaaatggcacct 11417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 29651339 - 29651381
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  29651339 catggtgggaaagaactctcctttcccaaattaaatggcacct 29651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 47199403 - 47199445
Alignment:
Q  157 atggtaggaaagaagtctcctttcccaaattaaatgtcaccta 199  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||    
T  47199403 atggtgggaaagaagtctcttttcccaaattaaatgccaccta 47199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 11417944 - 11417985
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  11417944 catggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 3847927 - 3847891
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatg 192  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  3847927 catggtgggaaaaaagtctcctttcccaaattaaatg 3847891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 10424163 - 10424123
Alignment:
Q  157 atggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||| |||||||| ||||||||||||||||||||| ||||    
T  10424163 atggtgggaaagaactctcctttcccaaattaaatggcacc 10424123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 13655528 - 13655708
Alignment:
Q  17 ggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgagagactattgtaatagt 116  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  13655528 ggacaaagataagaagaaaaaggtgggaaagaatcgcaattttaatggttagtgaagatagtaagataagaattcagtgttgagagactattgtaatagt 13655627  T
Q  117 gtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||||||||||||||||||||||||||||||||||  |||  | ||||||||||||| |||||||||||||||| ||||    
T  13655628 gtgttctttgtatgatccaatggttagaaaagactttcccataatgggaaagaagtctcttttcccaaattaaatgccacc 13655708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 4909593 - 4909658
Alignment:
Q  71 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaa 136  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  4909593 aagatggtgagataaaaatctagtgttgagagactattgtaatagtgtgctctttatgtgatccaa 4909658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 13654986 - 13654932
Alignment:
Q  144 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    ||||||||||   ||||| ||||||||||||||||||||||||||||||||||||    
T  13654986 aaaagactttcctatggtgggaaagaagtctcctttcccaaattaaatgtcacct 13654932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 8204161 - 8204118
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcaccta 199  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||    
T  8204161 catggtgggaaagaactctcctttcccaaattaaatggcaccta 8204118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 33001980 - 33001937
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatg 192  Q
    |||||| |||||| |||||||| |||||||||||||||||||||    
T  33001980 acttttccatggtgggaaagaactctcctttcccaaattaaatg 33001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 33002823 - 33002865
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  33002823 catggtgggaaagaactctcctttcccaaattaaatgacacct 33002865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 15184024 - 15184065
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  15184024 catggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 39167454 - 39167483
Alignment:
Q  163 ggaaagaagtctcctttcccaaattaaatg 192  Q
    ||||||||||||||||||||||||||||||    
T  39167454 ggaaagaagtctcctttcccaaattaaatg 39167483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 39950445 - 39950404
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  39950445 catggtgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 5276592 - 5276464
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 169  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  5276592 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttctttgtatgatccaatgattagaaaagactttcccatggtgggaaaga 5276493  T
Q  170 agtctcctttcccaaattaaatgtcacct 198  Q
    ||||||||||||||| ||||||| |||||    
T  5276492 agtctcctttcccaagttaaatgccacct 5276464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 21471058 - 21471013
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 201  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  21471058 catggtgggaaagaactctcctttcccaaattaaatggcacctaaa 21471013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 45139724 - 45139689
Alignment:
Q  165 aaagaagtctcctttcccaaattaaatgtcacctaa 200  Q
    |||||||||||||||||||||||||||| |||||||    
T  45139724 aaagaagtctcctttcccaaattaaatgccacctaa 45139689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 14574007 - 14574049
Alignment:
Q  157 atggtaggaaagaagtctcctttcccaaattaaatgtcaccta 199  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||    
T  14574007 atggtgggaaagaactctcctttcccaaattaaatggcaccta 14574049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 21471961 - 21472002
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  21471961 catggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 37543306 - 37543257
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    ||||||||||| |||||||||||| | |||||||| |||||||| |||||    
T  37543306 actttttcatgataggaaagaagtttactttcccatattaaatggcacct 37543257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 13134358 - 13134318
Alignment:
Q  157 atggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||| |||||||| ||||||||||||||||||||| ||||    
T  13134358 atggtgggaaagaactctcctttcccaaattaaatggcacc 13134318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 37874191 - 37874064
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 169  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  |||||| |||||||    
T  37874191 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattagtaaagactttcccatggtgggaaaga 37874092  T
Q  170 agtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||    
T  37874091 agtctcatttcccaagttaaatgtcacc 37874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 48869896 - 48869768
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 169  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  |||||| | |||||    
T  48869896 gaagatagtatgataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattagaaaagattttcccatggtggaaaaga 48869797  T
Q  170 agtctcctttcccaaattaaatgtcacct 198  Q
    ||||||||||||||| |||||||||||||    
T  48869796 agtctcctttcccaagttaaatgtcacct 48869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 35615893 - 35615767
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 169  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||  |||||| |||||||    
T  35615893 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattagaaaaga-attcccatggtgggaaaga 35615795  T
Q  170 agtctcctttcccaaattaaatgtcacc 197  Q
    |||||||||| |||| ||||||| ||||    
T  35615794 agtctccttttccaagttaaatgccacc 35615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 17496083 - 17496197
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 169  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||  ||||| | | |||    
T  17496083 gaagatagtaagataataatctagtgtggagagactattgtaatagtgtgttctttatatgatccaatgattaaaaaacacttttctatggtggaataga 17496182  T
Q  170 agtctcctttcccaa 184  Q
    |||||||||||||||    
T  17496183 agtctcctttcccaa 17496197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 48972445 - 48972497
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 201  Q
    |||||| |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  48972445 acttttccatggtgggaaagaactctcctttcccaaattaaatggcacctaaa 48972497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 8560873 - 8560839
Alignment:
Q  163 ggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||||||||||||||||||||||||||||||||    
T  8560873 ggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 35616770 - 35616824
Alignment:
Q  144 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    ||||||||||  |||||| |||||||||||||||||||||| ||||||| |||||    
T  35616770 aaaagactttcccatggtgggaaagaagtctcctttcccaagttaaatgccacct 35616824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 51987868 - 51987826
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  51987868 catggtgggaaagaagtctcctttcccaaattaaatgccacct 51987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 51974478 - 51974433
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 201  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  51974478 catggtgggaaagaactctcctttcccaaattaaatggcacctaaa 51974433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 193898 - 193850
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  193898 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 16270248 - 16270207
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  16270248 catggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 23440872 - 23440913
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  23440872 catggtgggaaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 51988471 - 51988512
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| | |||||||||||||||||||||||||||| ||||    
T  51988471 catggtggaaaagaagtctcctttcccaaattaaatgccacc 51988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 23440665 - 23440617
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| ||| || |||||||| ||||||||||||||||||||| ||||    
T  23440665 acttttccatagttggaaagaactctcctttcccaaattaaatggcacc 23440617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 48971753 - 48971705
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||| |||| || |||||||| ||||||||||||||||||||| ||||    
T  48971753 actttctcattgtgggaaagaactctcctttcccaaattaaatgacacc 48971705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 17227095 - 17226968
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 169  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||  |||||| |||||||    
T  17227095 gaagataggaagataaaaatctagtgttgagggactattgtaatagtgtgttctttgtatgattcattggttagaaaagattttcccatggtgggaaaga 17226996  T
Q  170 agtctcctttcccaaattaaatgtcacc 197  Q
    | ||||||||||||||||||||| ||||    
T  17226995 aatctcctttcccaaattaaatgccacc 17226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 17227943 - 17227996
Alignment:
Q  144 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  17227943 aaaagactttttcatggtgggaaagaagtctcctttcccaaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 41755541 - 41755493
Alignment:
Q  155 tcatggtaggaaagaagtctcctttcccaaattaaatgtcacctaaatt 203  Q
    ||||||| ||||| || ||||||||||||||||||||| ||||||||||    
T  41755541 tcatggtgggaaaaaactctcctttcccaaattaaatgacacctaaatt 41755493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 32490195 - 32490238
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatg 192  Q
    |||||| |||||| |||||||| |||||||||||||||||||||    
T  32490195 acttttccatggtgggaaagaactctcctttcccaaattaaatg 32490238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 36750444 - 36750487
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcaccta 199  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||    
T  36750444 catggtgggaaagaactctcctttcccaaattaaatggcaccta 36750487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 49757189 - 49757223
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaa 190  Q
    |||||||||||| ||||||||||||||||||||||    
T  49757189 catggtaggaaaaaagtctcctttcccaaattaaa 49757223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 19132600 - 19132563
Alignment:
Q  160 gtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  19132600 gtaggaaagaactctcctttcccaaattaaatggcacc 19132563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 44687163 - 44687212
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||| |||||| | |||||| ||||||||||||||||||||| |||||    
T  44687163 acttttccatggtggaaaagaattctcctttcccaaattaaatggcacct 44687212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 4486555 - 4486611
Alignment:
Q  80 agataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaa 136  Q
    |||||| ||| ||||||| ||||||||||||||||||||| | ||| | ||||||||    
T  4486555 agataaaaatttagtgtttagagactattgtaatagtgtgctttttatgtgatccaa 4486611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 38922784 - 38922748
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatg 192  Q
    |||||||||||| || |||||||||||||||||||||    
T  38922784 catggtaggaaataactctcctttcccaaattaaatg 38922748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 38923665 - 38923713
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||| |||||||| |||| |||||||||||||||| ||||    
T  38923665 acttttccatggtgggaaagaactctcatttcccaaattaaatggcacc 38923713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 9573762 - 9573636
Alignment:
Q  70 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 169  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||   || || | |||||    
T  9573762 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttctttgtatgatccaatgattagaaaagactttcctatagtggaaaaga 9573663  T
Q  170 agtctcctttcccaaattaaatgtcac 196  Q
    |||||| |||||||| |||||||||||    
T  9573662 agtctcatttcccaagttaaatgtcac 9573636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 7531870 - 7531829
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  7531870 catggtaggaaagaagtctcctttcccaaattaaatgccacc 7531829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 15083318 - 15083366
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  15083318 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 7193379 - 7193337
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  7193379 catggtgggaaagaactctcctttcccaaattaaatggcacct 7193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 7532456 - 7532489
Alignment:
Q  165 aaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||||||||||||||||||||||||| |||||    
T  7532456 aaagaagtctcctttcccaaattaaatgccacct 7532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 9574566 - 9574619
Alignment:
Q  144 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    ||||||||||   ||||| |||||||||||||||||||||| ||||||| ||||    
T  9574566 aaaagactttcctatggtgggaaagaagtctcctttcccaagttaaatgccacc 9574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 33480635 - 33480676
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  33480635 catggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 22582486 - 22582522
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatg 192  Q
    |||||| |||||||| |||||||||||||||||||||    
T  22582486 catggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 22587317 - 22587353
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatg 192  Q
    |||||| |||||||| |||||||||||||||||||||    
T  22587317 catggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 2155 - 2034
Alignment:
Q  71 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaa 170  Q
    |||||||||| |||| |||| |||||| ||||||||| ||||||||||||||||  |||||| ||||| ||| |||| |||||| ||| || ||||||||    
T  2155 aagatagtaatataaaaatccagtgttaagagactatagtaatagtgtgttcttcatatgattcaatgattaaaaaacacttttccatagtgggaaagaa 2056  T
Q  171 gtctcctttcccaaattaaatg 192  Q
    || || |||||||  |||||||    
T  2055 gtatcatttcccaggttaaatg 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 2273 - 2152
Alignment:
Q  71 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaa 170  Q
    |||||||||| |||| |||| |||||| ||||||||| ||||||||||||||||  |||||| ||||| ||| |||| |||||| ||| || ||||||||    
T  2273 aagatagtaatataaaaatccagtgttaagagactatagtaatagtgtgttcttcatatgattcaatgattaaaaaacacttttccatagtgggaaagaa 2174  T
Q  171 gtctcctttcccaaattaaatg 192  Q
    || || |||||||  |||||||    
T  2173 gtatcatttcccaggttaaatg 2152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 42455076 - 42455036
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcac 196  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  42455076 catggtagaaaagaagtctcctttcccaaattaaatgtcac 42455036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 7677465 - 7677422
Alignment:
Q  149 actttttcatggtaggaaagaagtctcctttcccaaattaaatg 192  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  7677465 actttttcatggtgggaaagaattctcctttcccaaattaaatg 7677422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 41194554 - 41194510
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacctaa 200  Q
    |||||| |||||||| ||||||||||||||||||||| |||||||    
T  41194554 catggtgggaaagaactctcctttcccaaattaaatggcacctaa 41194510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 23683512 - 23683461
Alignment:
Q  87 aatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatg 138  Q
    |||| |||||||| |||||||||||||| ||||||| || ||||||||||||    
T  23683512 aatcaagtgttgaaagactattgtaataatgtgttccttatatgatccaatg 23683461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 38778895 - 38778852
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcaccta 199  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||    
T  38778895 catggtgggaaagaactctcctttcccaaattaaatggcaccta 38778852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 19737901 - 19737947
Alignment:
Q  92 agtgttgagagactattgtaatagtgtgttctttgtatgatccaatg 138  Q
    ||||||||||||||||||||||||||||||  || ||||||| ||||    
T  19737901 agtgttgagagactattgtaatagtgtgtttcttatatgatctaatg 19737947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 37468951 - 37468909
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  37468951 catggtgggaaagaactctcctttcccaaattaaatggcacct 37468909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 47331920 - 47332002
Alignment:
Q  116 tgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||||||| |  ||||||||||| ||||||  ||||  |||||| ||||| || |  ||||||||||||||||||||||||    
T  47331920 tgtgttctttattagatccaatggtcagaaaaagctttcccatggtgggaaaaaactagcctttcccaaattaaatgtcacct 47332002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 668220 - 668179
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  668220 catggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 4984889 - 4984805
Alignment:
Q  116 tgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 201  Q
    |||||||||| |  ||||||||||| ||||||  ||||| |||||| ||||| || |  |||||||||||||||||| ||||||||    
T  4984889 tgtgttctttattagatccaatggtcagaaaaagcttttccatggt-ggaaaaaactaacctttcccaaattaaatgccacctaaa 4984805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 17145663 - 17145622
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  17145663 catggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 37469012 - 37469053
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  37469012 catggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 38779570 - 38779611
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 197  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  38779570 catggtgggaaagaactctcctttcccaaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 45887947 - 45888032
Alignment:
Q  116 tgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 201  Q
    |||||||||| |  ||||||||||| ||||||  ||||  |||||| ||||| || |  |||||||||||||||||| ||||||||    
T  45887947 tgtgttctttattagatccaatggtcagaaaaagctttcccatggtgggaaaaaactagcctttcccaaattaaatgccacctaaa 45888032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 7677816 - 7677852
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatg 192  Q
    |||||| |||||||| |||||||||||||||||||||    
T  7677816 catggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 167 - 209
Alignment:
Q  156 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 198  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  167 catggtgggaaagaactctcctttcccaaattaaatggcacct 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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