View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_12 (Length: 432)
Name: NF9661A_low_12
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 98 - 365
Target Start/End: Complemental strand, 11227519 - 11227252
Alignment:
| Q |
98 |
gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaattactct |
197 |
Q |
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| T |
11227519 |
gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaactactct |
11227420 |
T |
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| Q |
198 |
aacataaaattagcatcttcatcactacagttattatgatattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgacatttggct |
297 |
Q |
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| T |
11227419 |
aacatgaaattagcatcttcatcactacagttattatgatattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgatatttggct |
11227320 |
T |
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| Q |
298 |
cttgttcattgtcatcttcttgcagtaattgcaagtcttctatgttctccacagtttgctcacaaaaa |
365 |
Q |
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| T |
11227319 |
cttgttcattgtcatcttcttgcagtaattgcaagtcttctatgttctccacagtttgctcacaaaaa |
11227252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11227616 - 11227574
Alignment:
| Q |
1 |
aaatatctgcacaatttgctaaaaaatgctaaaacatggaatg |
43 |
Q |
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| T |
11227616 |
aaatatctgcacaatttgctaaaaaatgctaaaacatggaatg |
11227574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 10128187 - 10128093
Alignment:
| Q |
98 |
gtacaaagttcataaaccttaattgagttgaaaagaacaata--aactatgacttatagcttattagaaaagcacaaaatgttcatataattaaa |
190 |
Q |
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| T |
10128187 |
gtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacataatgttcatataattaaa |
10128093 |
T |
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