View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_124 (Length: 248)
Name: NF9661A_low_124
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_124 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 6256424 - 6256227
Alignment:
| Q |
17 |
tataaccaacaatgaataccaattttatttcatatagcatataatttgctttacaatgcaaatgtgaatcacatcaatacaaatgtgaattacatcacga |
116 |
Q |
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| T |
6256424 |
tataaccaacaatgaataccaattttatttcatttagtatataatttgctttacaatgcaaatgtgaatcacatcaatacaaatgtgaattacatcacaa |
6256325 |
T |
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| Q |
117 |
atacacaaaatagaaattacatttgatgttgcaaaaagagtacaattaaggagggccttaaaacaatgggcgcctctccaccaaaatcaaaactcaac |
214 |
Q |
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| T |
6256324 |
atacacaaaatagaaattacatttgatgttgcaaaaagagtacaattaaggagggccttaaaataaagggcgcctctccaccaaaatcaaaactcaac |
6256227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 51207410 - 51207604
Alignment:
| Q |
17 |
tataaccaacaatgaataccaattttatttcatatagcatataatttgctttacaatgcaaatgtgaatcacatcaatacaaatgtgaattacatcacga |
116 |
Q |
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| T |
51207410 |
tataaccaacaatgaataccaattttatttcatatagtatataatttgctttacaatgcaaatgtgaatcacatcaatacaaatgtgaattacatcacaa |
51207509 |
T |
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| Q |
117 |
atacacaaaatagaaattacatttgatgttgcaaaaagagtacaattaaggagggccttaaaacaatgggcgcctctccaccaaaatcaaaactca |
212 |
Q |
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| T |
51207510 |
atacacaaaatagaaattacatttgatgttgcaaaaagagtacaattaaggagggcc-taaaacaaagggtgcctctccaccaaaatcaaaactca |
51207604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 43429856 - 43430033
Alignment:
| Q |
17 |
tataaccaacaatgaataccaattttatttcatatagcatataatttgctttacaatgcaaatgtgaatcacatcaatacaaatgtgaattacatcacga |
116 |
Q |
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| T |
43429856 |
tataaccaacaatgaataccaattttatttcatatagtatataatttgctttacaatgca---------------------aatgtgaattacatcacaa |
43429934 |
T |
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| Q |
117 |
a-tacacaaaatagaaattacatttgatgttgcaaaaagagtacaattaaggagggccttaaaacaatgggcgcctctccaccaaaatcaaaactcaac |
214 |
Q |
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| T |
43429935 |
aatacacaaaatagaaattacatttgatgttgcaaaaagagtacaattaaggagggccttaaaacaaagggtgcctctccaccaaaatcaaaactcaac |
43430033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 54523875 - 54523968
Alignment:
| Q |
120 |
cacaaaatagaaattacatttgatgttgcaaaaagagtacaattaaggagggccttaaaacaatgggcgcctctccaccaaaatcaaaactcaa |
213 |
Q |
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| T |
54523875 |
cacaaaatagaaattacatttgatgttgtaaaaaaagtacaattaaggagggctttaaaacaaagggctcctctccaccaaaatcaaaactcaa |
54523968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 54523803 - 54523866
Alignment:
| Q |
17 |
tataaccaacaatgaataccaattttatttcatatagcatataatttgctttacaatgcaaatgtgaat |
85 |
Q |
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| T |
54523803 |
tataaccaacaatgaataccaattt-----catatagtatataatttgctttacaatacaaatgtgaat |
54523866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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