View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_125 (Length: 248)
Name: NF9661A_low_125
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_125 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 41914708 - 41914904
Alignment:
| Q |
21 |
caggtttccaaaaagagatttttctagaatcacctccgataggcagctccaaatatacaaaaggaatggtacctctgcgacaactcatcatcatagcagc |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41914708 |
caggtttccaaaaagagatttttctagaatcacctccgataggcagccccaaatatacaaaaggaatggtacctcgacgacaactcatcatcatagcagc |
41914807 |
T |
|
| Q |
121 |
ctctgacaaccaggaagcagggatgtttgcaccaatcagcataattttgtgaaaattcattgtgagacccgaaagctccccaaataaaagcaacacc |
217 |
Q |
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|||||||||||||||||||| ||| ||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41914808 |
ctctgacaaccaggaagcagagatatttacaccagtcagcatacttttgtgaaaattcactgtgagacccgaaagctccccaaataaaagcaacacc |
41914904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 6023800 - 6023993
Alignment:
| Q |
24 |
gtttccaaaaagagatttttctagaatcacctccgataggcagctccaaatatacaaaaggaatggtacctctgcgacaactcatcatcatagcagcctc |
123 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||| | ||||||||||| ||||| |
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| T |
6023800 |
gtttccaaaaagagagtttcttagaatcacctccgataggcagccccaaatagacaaaagggatggtacctcttcgacaattaatcatcatagccgcctc |
6023899 |
T |
|
| Q |
124 |
tgacaaccaggaagcagggatgtttgcaccaatcagcataattttgtgaaaattcattgtgagacccgaaagctccccaaataaaagcaacacc |
217 |
Q |
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||||||||| ||| || |||| || ||||| ||| |||| | ||||||||||| | | | ||||| || | |||| ||||||||||||||||| |
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| T |
6023900 |
tgacaaccaagaaacatggatattcacaccagtcaacatactcttgtgaaaatttacttttagacctgacatctcctcaaataaaagcaacacc |
6023993 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 32228012 - 32228205
Alignment:
| Q |
21 |
caggtttccaaaaagagatttttctagaatcacctccgataggcagctccaaatatacaaaaggaatggtacctctgcgacaactcatcatcatagcagc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
32228012 |
caggtttccaaaaagagatttttctagaatcacctctgataggcagcttcaaatatacaaaaggaatggtacctctgcaacaactcatcatcatagtagc |
32228111 |
T |
|
| Q |
121 |
ctctgacaaccaggaagcagggatgtttgcaccaatcagcataattttgtgaaaattcattgtgagacccgaaagctccccaaataaaagcaac |
214 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32228112 |
ctctgacaaccaggaagcagggatgtttacaccagtgagcatacttttgtgaaaattcattgtgagacccgaaagctccccaaatgaaagcaac |
32228205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 12727254 - 12727365
Alignment:
| Q |
21 |
caggtttccaaaaagagatttttctagaatcacctccgataggcagctccaaatatacaaaaggaatggtacctctgcgacaactcatcatcatagcagc |
120 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| ||||||||| | ||||| ||||||||||||| |||||| |||||| |||||| | |||| || |
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| T |
12727254 |
caggtttccaaaaagaaagttttctagaatcacctcctataggcagccctaaatagacaaaaggaatggcacctcttcgacaattcatcaacttagccgc |
12727353 |
T |
|
| Q |
121 |
ctctgacaacca |
132 |
Q |
| |
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|||||| ||||| |
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| T |
12727354 |
ctctgataacca |
12727365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 25108873 - 25108677
Alignment:
| Q |
21 |
caggtttccaaaaagagatttttctagaatcacctccgataggcagctccaaatatacaaaaggaatggtacctctgcgacaactcatcatcatagcagc |
120 |
Q |
| |
|
|||||||||||||||| | ||| | |||||| |||| ||||||||| ||||||| |||||||||||||| ||||| |||||| ||| ||||||||| || |
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| T |
25108873 |
caggtttccaaaaagaaagtttcccagaatcccctcatataggcagccccaaataaacaaaaggaatggtgcctcttcgacaattcaacatcatagcggc |
25108774 |
T |
|
| Q |
121 |
ctctgacaaccaggaagcagggatgtttgcaccaatcagcataattttgtgaaaattcattgtgagacccgaaagctccccaaataaaagcaacacc |
217 |
Q |
| |
|
|||||||||||| ||| | | || ||| ||||| ||| |||| | ||||||||||| | | |||||||||| || ||| || |||||||||||||| |
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| T |
25108773 |
ctctgacaaccaagaacccagaatatttacaccagtcaacatactcttgtgaaaatttactttgagacccgacagttcctcagataaaagcaacacc |
25108677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 40903362 - 40903171
Alignment:
| Q |
21 |
caggtttccaaaaagagatttttctagaatcacctccgataggcagctccaaatatacaaaaggaatggtacctctgcgacaactcatcatcatagcagc |
120 |
Q |
| |
|
|||||||||||||||| | ||| | |||||| ||||| ||||||| | ||||||| |||||||||||| |||| || |||||| |||||| || ||| || |
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| T |
40903362 |
caggtttccaaaaagaaagtttccgagaatcccctccaataggcaaccccaaataaacaaaaggaatgatacccctccgacaattcatcaacaaagccgc |
40903263 |
T |
|
| Q |
121 |
ctctgacaaccaggaagcagggatgtttgcaccaatcagcataattttgtgaaaattcattgtgagacccgaaagctccccaaataaaagca |
212 |
Q |
| |
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||| |||||||| ||| ||| || ||| ||||| ||| |||| | ||||| ||||| | | ||||||| ||||||||| |||||||||||| |
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| T |
40903262 |
ctcagacaaccacgaaataggaatatttacaccagtcaacatactcttgtggaaattaactttgagacctgaaagctcctcaaataaaagca |
40903171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 32304129 - 32304322
Alignment:
| Q |
24 |
gtttccaaaaagagatttttctagaatcacctccgataggcagctccaaatatacaaaaggaatggtacctctgcgacaactcatcatcatagcagcctc |
123 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||||||| | ||||| ||||||||||||| |||||| |||||| |||||| | |||| |||| |
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| T |
32304129 |
gtttccaaaaagaaagttttctagaatcacctcctataggcagccctaaatagacaaaaggaatggcacctcttcgacaattcatcaacttagccacctc |
32304228 |
T |
|
| Q |
124 |
tgacaaccaggaagcagggatgtttgcaccaatcagcataattttgtgaaaattcattgtgagacccgaaagctccccaaataaaagcaacacc |
217 |
Q |
| |
|
||| ||||| || | || || || ||||| ||| ||| ||||||| ||||||| | ||||||| || | |||| ||||||| | ||||||| |
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| T |
32304229 |
tgataaccaagagacgggaatattaacaccagtcaacatgcttttgtggaaattcactttgagacctgacaactcctcaaataacaacaacacc |
32304322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 21606518 - 21606604
Alignment:
| Q |
4 |
aacaatgagatggacatcaggtttccaaaaagagatttttctagaatcacctccgataggcagctccaaatatacaaaaggaatggt |
90 |
Q |
| |
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||||||| ||| |||| |||||||||||||||| | || ||||||||||| || ||||| || ||| ||| |||||||||||||| |
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| T |
21606518 |
aacaatgtgatcgacaacaggtttccaaaaagaaaacttcctagaatcaccaccaatagggagtcccagatagacaaaaggaatggt |
21606604 |
T |
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