View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_127 (Length: 248)
Name: NF9661A_low_127
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_127 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 48993737 - 48993496
Alignment:
| Q |
1 |
tatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaattcctataacaggaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993737 |
tatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaattcctataacaggaag |
48993638 |
T |
|
| Q |
101 |
caccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatacaccctagtataagcatcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48993637 |
caccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccctagtataagcatcaca |
48993538 |
T |
|
| Q |
201 |
caaggcaccattgcacctgccaaaatttccaaactatctgtc |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993537 |
caaggcaccattgcacctgccaaaatttccaaactatctgtc |
48993496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 22623998 - 22624233
Alignment:
| Q |
6 |
tgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaattcctataacaggaagcacca |
105 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||| ||||| | ||||| | ||| |||||| ||||| || | |||||| ||||||| |
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| T |
22623998 |
tgcaacaaaagcacaaatctaaacatagcatcattttcgaccaagaaatttagcttattcgacaaagcaacaatcccaataccaagaacaggtagcacca |
22624097 |
T |
|
| Q |
106 |
caagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatacaccctagtataagcatcacacaagg |
205 |
Q |
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||||||||||||| || ||||| |||||| ||| ||||||| | || ||||||||||||||||| ||||||| ||||| ||||||||||||| |||| |
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| T |
22624098 |
agagtcttgccacaacaataccaatagtagttctaagtccaagtctagactcatttggtccttcagcaagcataccccctaatataagcatcacagaagg |
22624197 |
T |
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| Q |
206 |
caccattgcacctgccaaaatttccaaactatctgt |
241 |
Q |
| |
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|||||||||||| | ||||| || ||||||||||| |
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| T |
22624198 |
caccattgcaccacctaaaatctctaaactatctgt |
22624233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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