View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_132 (Length: 246)
Name: NF9661A_low_132
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_132 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 40659959 - 40660096
Alignment:
| Q |
15 |
caacaaacaacaa-gaagcacatcatggaacatttggcttgcaccctaatatcaagctgatacccaagtcctacaagccctgtaaaccataggctccaaa |
113 |
Q |
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| T |
40659959 |
caacaaacaacaaagaagcacatcatggaacatttggcttgcacactactatcaagctgatacccaattcctacatgccctgtaaaccataggctccaaa |
40660058 |
T |
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| Q |
114 |
caggacaacgaccaagttcgaccttcacaaagcatgac |
151 |
Q |
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| T |
40660059 |
caggacaacaaccaagttcaaccttcacaaagcatgac |
40660096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 40660127 - 40660175
Alignment:
| Q |
181 |
tctgcaccactagccacacaccaccttttaaatcctgcagcagtgatgt |
229 |
Q |
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| T |
40660127 |
tctgcaccactagccacacaccaccttttaaatcctgcagcagtgatgt |
40660175 |
T |
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