View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9661A_low_140 (Length: 243)
Name: NF9661A_low_140
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_140 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0074 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 18945 - 19165
Alignment:
| Q |
23 |
aaaactggatgcatttgatgtttatttaaagttgaatgaaagttaacaccgttacttaagctgtcctgcatttgttttggatattttactggtatttttg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18945 |
aaaactggatgcatttgatgtttatttaaagttgtatgaaagttaacaccgttacttaatctgtcctgcatttgttttggatattttactgagatttttg |
19044 |
T |
|
| Q |
123 |
ttcaataatatgcttttaacttgttcatattttggcttcacttaaatgttttgttttttgctgaatctatattgatgtattgagttaatgttaattatat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19045 |
ttcaataatatgcttttaacttgttcatattttggcttcacttaaatgttttgttttttgccgaatctatatttatgtattgagttaatgttaattatat |
19144 |
T |
|
| Q |
223 |
gtgaacgtgattagacaattg |
243 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
19145 |
gtgaacgtgattagacaattg |
19165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 4060281 - 4060500
Alignment:
| Q |
23 |
aaaactggatgcatttgatgtttatttaaagttgaatgaaagttaacaccgttacttaagctgtcctgcatttgttttggatattttactggtatttttg |
122 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4060281 |
aaaactggatgcatttgat--ttatttaaagttgaatgaaagttaacactgttacttaatctgtcctgcatttgttttggatattttactgagatttttg |
4060378 |
T |
|
| Q |
123 |
ttcaataatatgcttttaacttgttcatattttggcttcacttaaatg--ttttg-ttttttgctgaatctatattgatgtattgagttaatgttaatta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4060379 |
ttcaataatatgcttttaacttgttcatattttggcttcacttaaatggtttttgcttttttgctgaatctatatttgtgtattgagttaatgttaatta |
4060478 |
T |
|
| Q |
220 |
tatgtgaacgtgattagacaat |
241 |
Q |
| |
|
||| ||| ||||||||||||| |
|
|
| T |
4060479 |
tataggaaagtgattagacaat |
4060500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 11363330 - 11363549
Alignment:
| Q |
23 |
aaaactggatgcatttgatgtttatttaaagttgaatgaaagttaacaccgttacttaagctgtcctgcatttgttttggatattttactggtatttttg |
122 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
11363330 |
aaaactggatgcatttgat--ttatttaaagttgaatgaaagttaacactgttacttaatctgtcctgcatttgttttggatattttactgacaattttg |
11363427 |
T |
|
| Q |
123 |
ttcaataatatgcttttaacttgttcatattttggcttcacttaaatg--ttttg-ttttttgctgaatctatattgatgtattgagttaatgttaatta |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11363428 |
ttcaataatatggttttaacttgttcatattttggcttcacttaaatggtttttgtttttttgctgaatctatatttgtgtattgagttaatgttaatta |
11363527 |
T |
|
| Q |
220 |
tatgtgaacgtgattagacaat |
241 |
Q |
| |
|
|||| ||| ||||||||||||| |
|
|
| T |
11363528 |
tatgggaaagtgattagacaat |
11363549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University