View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_146 (Length: 242)
Name: NF9661A_low_146
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_146 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 8946993 - 8947195
Alignment:
| Q |
22 |
caaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgg |
121 |
Q |
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| T |
8946993 |
caaaatgatgaattgttgctattttcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactctcgg |
8947092 |
T |
|
| Q |
122 |
gccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8947093 |
gccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtga |
8947192 |
T |
|
| Q |
222 |
gtg |
224 |
Q |
| |
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||| |
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| T |
8947193 |
gtg |
8947195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 8973502 - 8973299
Alignment:
| Q |
22 |
caaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgg |
121 |
Q |
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||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||| |||| || ||| ||||||| || |||||||||||||| | |
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| T |
8973502 |
caaaaagatgaattgttggtattttcaaattgacataattgccctttccattttgaaggaatttgaggcatgtcattatctttgaaactttcactttctg |
8973403 |
T |
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| Q |
122 |
gccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtga |
221 |
Q |
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| T |
8973402 |
gccaaacaccggtatcaatcataccaacaatgacatctttgccataatcagaagctggccatgcccctttgtatgaattaaggccaaggaattgtggtga |
8973303 |
T |
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| Q |
222 |
gtga |
225 |
Q |
| |
|
|||| |
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| T |
8973302 |
gtga |
8973299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 8962100 - 8961899
Alignment:
| Q |
22 |
caaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgg |
121 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||| | |
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| T |
8962100 |
caaaaagatgaattgttggtattttcaaattgacataatttccctttccattttgaaggaattttagtaaatccattatcattgaaactttcactttctg |
8962001 |
T |
|
| Q |
122 |
gccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtga |
221 |
Q |
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| T |
8962000 |
gccaaacaccggtatcaatcacaccaacaatgacatcttttccataatcagaagctagccacacccctttgtagggattaagaccaaggaattgaggtga |
8961901 |
T |
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| Q |
222 |
gt |
223 |
Q |
| |
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|| |
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|
| T |
8961900 |
gt |
8961899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 21688169 - 21688346
Alignment:
| Q |
47 |
caaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaacc |
146 |
Q |
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||||||||||||| | |||||||||||||| || |||||||||||||||| ||| |||||||||||||||| ||||||||||| | ||| || | ||| |
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| T |
21688169 |
caaattgacataattggcctttccattttgagggtattttagtcattccatcatctctaaaactttcactttctggccaaacaccagtgtctattacacc |
21688268 |
T |
|
| Q |
147 |
aataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
224 |
Q |
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|| ||||| ||||| |||||| | ||||| ||||||||||||| | ||||||| |||||||| ||||| |||||||| |
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| T |
21688269 |
aacaatgatatctttaccaaaatcagaagttggccatgcccctctatatggattaaggccaagaaattgaggtgagtg |
21688346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 34963779 - 34963857
Alignment:
| Q |
64 |
cctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatca |
142 |
Q |
| |
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||||||||||||||||| |||||||||||||||| ||| || || || |||||||| |||||||| |||| |||||||| |
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| T |
34963779 |
cctttccattttgaaggaattttagtcattccatcatctttgaagctctcactttctggccaaactcctgtgtcaatca |
34963857 |
T |
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