View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_148 (Length: 240)

Name: NF9661A_low_148
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_148
NF9661A_low_148
[»] chr5 (3 HSPs)
chr5 (75-222)||(40456640-40456787)
chr5 (75-137)||(40482086-40482148)
chr5 (170-222)||(40362953-40363005)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 40456640 - 40456787
Alignment:
Q  75 aatctactggcaagagaaagtaaacatccaaattcaaccacttacaaaccacatatgtacagaaataaccagcaaagagatggaattctgaccctaagat 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40456640 aatctactggcaagagaaagtaaacatccaaattcaaccacttacaaaccacatatatacagaaataaccagcaaagagatggaattctgaccctaagat 40456739  T
Q  175 tccttcttgttgtcatttgttcaaggactaattggtatcacatgtgat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40456740 tccttcttgttgtcatttgttcaaggactaattggtatcacatgtgat 40456787  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 40482086 - 40482148
Alignment:
Q  75 aatctactggcaagagaaagtaaacatccaaattcaaccacttacaaaccacatatgtacaga 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40482086 aatctactggcaagagaaagtaaacatccaaattcaaccacttacaaaccacatatatacaga 40482148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 40363005 - 40362953
Alignment:
Q  170 aagattccttcttgttgtcatttgttcaaggactaattggtatcacatgtgat 222  Q
    |||||| ||||| ||| |||||||| |||||||||||||||||||||| ||||    
T  40363005 aagatttcttctagttatcatttgtgcaaggactaattggtatcacatttgat 40362953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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