View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_150 (Length: 240)

Name: NF9661A_low_150
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_150
NF9661A_low_150
[»] chr3 (8 HSPs)
chr3 (24-86)||(5696450-5696512)
chr3 (20-95)||(5670758-5670833)
chr3 (20-95)||(5680251-5680326)
chr3 (21-95)||(5694404-5694478)
chr3 (174-220)||(5795767-5795813)
chr3 (54-95)||(5736864-5736905)
chr3 (54-95)||(5773976-5774017)
chr3 (16-95)||(5794742-5794818)


Alignment Details
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 5696450 - 5696512
Alignment:
Q  24 caagccagataagaatcaagactttacaaagattcttgttgcaagaagaggtggagaaataat 86  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  5696450 caagccagataagagtcaagactttacaaagattcttgttgcaagaagaggcggagaaataat 5696512  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 5670758 - 5670833
Alignment:
Q  20 gttgcaagccagataagaatcaagactttacaaagattcttgttgcaagaagaggtggagaaataataaagtagat 95  Q
    |||||||||||||||||  ||| | |||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  5670758 gttgcaagccagataaggttcaggcctttacaatgattattgttgcaagaagaggaggagaaataataaagtagat 5670833  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 5680251 - 5680326
Alignment:
Q  20 gttgcaagccagataagaatcaagactttacaaagattcttgttgcaagaagaggtggagaaataataaagtagat 95  Q
    |||||||||||||||||  ||| | |||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  5680251 gttgcaagccagataaggttcaggcctttacaatgattattgttgcaagaagaggaggagaaataataaagtagat 5680326  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 5694404 - 5694478
Alignment:
Q  21 ttgcaagccagataagaatcaagactttacaaagattcttgttgcaagaagaggtggagaaataataaagtagat 95  Q
    ||||||||||||||||  ||| | |||||||| |||| |||||||||||||||| ||||||||||| ||||||||    
T  5694404 ttgcaagccagataaggttcaggcctttacaatgattattgttgcaagaagaggaggagaaataatcaagtagat 5694478  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 5795767 - 5795813
Alignment:
Q  174 cttataagaaaacatacaatagtataacctttggtaactaatataag 220  Q
    |||||||| |||||||||||| ||||||||||||| |||||||||||    
T  5795767 cttataagcaaacatacaataatataacctttggtgactaatataag 5795813  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 5736864 - 5736905
Alignment:
Q  54 gattcttgttgcaagaagaggtggagaaataataaagtagat 95  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  5736864 gattcttgttgcaagaaaaggaggagaaataataaagtagat 5736905  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 5773976 - 5774017
Alignment:
Q  54 gattcttgttgcaagaagaggtggagaaataataaagtagat 95  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  5773976 gattcttgttgcaagaaaaggaggagaaataataaagtagat 5774017  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 5794742 - 5794818
Alignment:
Q  16 aacggttgcaagccagataagaatcaagactttacaaagattcttgttgcaagaagaggtggagaaataataaagtagat 95  Q
    |||||| |||||||||| |||| ||| | |||||| | ||||||||| |||||||||   ||||||||||| ||||||||    
T  5794742 aacggtcgcaagccagagaagattcaggcctttacgatgattcttgtggcaagaaga---ggagaaataatgaagtagat 5794818  T

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