View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9661A_low_151 (Length: 239)
Name: NF9661A_low_151
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_151 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 39693974 - 39693755
Alignment:
| Q |
9 |
tgagatggacatcatatcttaacccaaaatcttaagacattgagtttatactctcacttataaataacgtgagatttttaactcac--ttgccacgcatt |
106 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
39693974 |
tgagttggacaccacatcttaacccaaaatcttaaggcattgagtttatgctctcacttataaataacgtgagatttttaactcacacttgctacgcatt |
39693875 |
T |
|
| Q |
107 |
agggtctgacatcaaaaagtagcactccactatctgcgacaaaaatctacgaccttgattcttcatcatttctattgaaacaaaaagaaaatcatcacaa |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39693874 |
agggtttgacatcaaaaagtagcactccactatctgcgactaaaatctacgaccttgattcttcatcatttctattgaaacagaaagaaaatcatcacaa |
39693775 |
T |
|
| Q |
207 |
caatggactccaacaccaaa |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39693774 |
caatggactccaacaccaaa |
39693755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 2336744 - 2336696
Alignment:
| Q |
9 |
tgagatggacatcatatcttaacccaaaatcttaagacattgagtttat |
57 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
2336744 |
tgagttggacaccacatcttaacccaaaatcttaaggcattgaatttat |
2336696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 10498841 - 10498881
Alignment:
| Q |
18 |
catcatatcttaacccaaaatcttaagacattgagtttata |
58 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10498841 |
catcatatcttaacccaaaactttaagacattgagtttata |
10498881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 50400048 - 50400019
Alignment:
| Q |
24 |
atcttaacccaaaatcttaagacattgagt |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
50400048 |
atcttaacccaaaatcttaagacattgagt |
50400019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 11307286 - 11307254
Alignment:
| Q |
16 |
gacatcatatcttaacccaaaatcttaagacat |
48 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
11307286 |
gacatcatatcttaatccaaaatcttaagacat |
11307254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 7192835 - 7192787
Alignment:
| Q |
9 |
tgagatggacatcatatcttaacccaaaatcttaagacattgagtttat |
57 |
Q |
| |
|
|||| ||||||||| ||||| || ||||| ||||||||||||||||||| |
|
|
| T |
7192835 |
tgagttggacatcacatctttactcaaaaccttaagacattgagtttat |
7192787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University