View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_152 (Length: 239)

Name: NF9661A_low_152
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_152
NF9661A_low_152
[»] chr1 (5 HSPs)
chr1 (108-224)||(23915232-23915348)
chr1 (22-80)||(23915127-23915185)
chr1 (22-80)||(23922776-23922834)
chr1 (82-145)||(23922872-23922935)
chr1 (164-224)||(23922954-23923014)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 23915232 - 23915348
Alignment:
Q  108 ttagggttcttaatttataggcattatgatgcagtaccnnnnnnnnaaggacttcactcagtcaaaataagtcaatgaatgtagtcagaaagaaattcat 207  Q
    ||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23915232 ttagggttcttaatttataggcattataatgcagtaccttttttttaaggacttcactcagtcaaaataagtcaatgaatgtagtcagaaagaaattcat 23915331  T
Q  208 tcaccattaattttctt 224  Q
    ||||||||||| |||||    
T  23915332 tcaccattaatattctt 23915348  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 23915127 - 23915185
Alignment:
Q  22 aaagatcattgaaatggtgagcaaaatggataaataagtttaagatgccattttctctt 80  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  23915127 aaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattttctctt 23915185  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 23922776 - 23922834
Alignment:
Q  22 aaagatcattgaaatggtgagcaaaatggataaataagtttaagatgccattttctctt 80  Q
    |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  23922776 aaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctctt 23922834  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 23922872 - 23922935
Alignment:
Q  82 tgaggagaatgaagaagggacgttacttagggttcttaatttataggcattatgatgcagtacc 145  Q
    |||||||| || ||||| |||||||||||||||||||||| |||||||||||| ||| ||||||    
T  23922872 tgaggagagtggagaagagacgttacttagggttcttaatatataggcattataatgtagtacc 23922935  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 23922954 - 23923014
Alignment:
Q  164 ctcagtcaaaataagtcaatgaatgtagtcagaaagaaattcattcaccattaattttctt 224  Q
    |||| ||||||| ||| |||||||||||||||||| ||||  | ||||||||||| |||||    
T  23922954 ctcaatcaaaatgagttaatgaatgtagtcagaaacaaataaagtcaccattaatattctt 23923014  T

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