View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_163 (Length: 234)
Name: NF9661A_low_163
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_163 |
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| [»] scaffold0133 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 41222322 - 41222154
Alignment:
| Q |
46 |
ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagctagcgaccttatctttggaaactcac |
145 |
Q |
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| T |
41222322 |
ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaatctagcgaccttatctttcgaaactcac |
41222223 |
T |
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| Q |
146 |
tgatatgcaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttat |
214 |
Q |
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| T |
41222222 |
tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttat |
41222154 |
T |
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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 13375861 - 13375997
Alignment:
| Q |
64 |
caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagc-------tagcgaccttatctttggaaactcactgatatgcaat |
156 |
Q |
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| T |
13375861 |
caacatagagcaactaacaatacttaacctttgcaagtttcggagttgctgaaagctgtctggtagtgaccttaacttcggaaacccactgatttttaat |
13375960 |
T |
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| Q |
157 |
tcttgaagagaagtcatggcaccctaccagtccggca |
193 |
Q |
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| T |
13375961 |
ctttgaagagtagtcatggcacccaaccagtctggca |
13375997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 16985223 - 16985359
Alignment:
| Q |
64 |
caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgcaat |
156 |
Q |
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| T |
16985223 |
caacatagggcaatcaataataattaacttttgcaaatttcggagttgctgaaagctgtctggtagtgaacttaactttggaaagtcaatgatgtataat |
16985322 |
T |
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| Q |
157 |
tcttgaagagaagtcatggcaccctaccagtccggca |
193 |
Q |
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| T |
16985323 |
tcttgaagagaagtcatggcacccaaacagtctggca |
16985359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 16795006 - 16795043
Alignment:
| Q |
81 |
caatacttaacttttgcatgtttcggagttgctgaaag |
118 |
Q |
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| T |
16795006 |
caatacttaactcttgcaagtttcggagttgctgaaag |
16795043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 38942998 - 38943064
Alignment:
| Q |
127 |
cttatctttggaaactcactgatatgcaattcttgaagagaagtcatggcaccctaccagtccggca |
193 |
Q |
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| T |
38942998 |
cttaacttcggaaacccactgatttgtaatctttgaagagaagtcatggcacccaaccagtccggca |
38943064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 7055640 - 7055522
Alignment:
| Q |
82 |
aatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgcaattcttgaagagaagtcatg |
174 |
Q |
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| T |
7055640 |
aatacttaacttttgtaagttttggagttgctgaatgctgtctggtagcgaccttaacatcggaaacctagagatttgtaatacttgaagagaagtcatg |
7055541 |
T |
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| Q |
175 |
gcaccctaccagtccggca |
193 |
Q |
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| T |
7055540 |
gcacccaaccagtccggca |
7055522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 38941663 - 38941597
Alignment:
| Q |
127 |
cttatctttggaaactcactgatatgcaattcttgaagagaagtcatggcaccctaccagtccggca |
193 |
Q |
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| T |
38941663 |
cttaactttggaaacttaaggatgtgtaatacttgaagagaagtcatggcacccaaccagtctggca |
38941597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 6380 - 6415
Alignment:
| Q |
158 |
cttgaagagaagtcatggcaccctaccagtccggca |
193 |
Q |
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| T |
6380 |
cttgaagagaagtcatggcacccaaccagtccggca |
6415 |
T |
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