View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_164 (Length: 234)
Name: NF9661A_low_164
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_164 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 28871240 - 28871015
Alignment:
| Q |
9 |
tggtgttctatcttatcttgctgacacacgacacaccttgctacaaactccgagatttcaattttcatacttggccaccaatactctttcttcaaatcat |
108 |
Q |
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| T |
28871240 |
tggtgttctatcttaacttgctgacacacgacacaccttgctacaaactctgagatttcaattttcatacttggccaccaatactctttcttcgaatcat |
28871141 |
T |
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| Q |
109 |
ggtacatcttggtggcaccaggatgaacagaaaaactactcttgtgtgcttcctctaagatcaccctcctcagtttacatcattcggaacacaaattcta |
208 |
Q |
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| T |
28871140 |
ggtacatcttggtggcaccaagatgaatagaaaaactactcttgtgtgcttcctctaagatcaacctcctcagtttacatcattcggaacacaaattcta |
28871041 |
T |
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| Q |
209 |
ccttcgaataatatagtcccatctga |
234 |
Q |
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| T |
28871040 |
ccttcgaataatatagtcccatctga |
28871015 |
T |
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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 10534589 - 10534670
Alignment:
| Q |
70 |
ttttcatacttggccaccaatactctttcttcaaatcatggtacatcttggtggcaccaggatgaacagaaaaactactctt |
151 |
Q |
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| T |
10534589 |
ttttcattctgggacaccaatagtctttgttcaaatcatgacacatcttggtcgcaccggggtgaatagaaaaattactctt |
10534670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 21354896 - 21354745
Alignment:
| Q |
9 |
tggtgttctatcttatcttgctgacacacgacacaccttgctacaaactccgagatttcaattttcatacttggccaccaatactctttcttcaaatcat |
108 |
Q |
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| T |
21354896 |
tggtgtttaatcttaacttgctggcacactatacatcttgctacaaattctgcaatcttagttttcatcccaggccaccaataatctttcttcaaatatt |
21354797 |
T |
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| Q |
109 |
ggtacatcttggtggcaccaggatgaacagaaaaactactcttgtgtgcttc |
160 |
Q |
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| T |
21354796 |
ggtacatcttggtagcacccggatgaatagagaaactactcttatgagcttc |
21354745 |
T |
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