View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_17 (Length: 420)
Name: NF9661A_low_17
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 414
Target Start/End: Complemental strand, 4236320 - 4235918
Alignment:
| Q |
12 |
atgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatatctgtgatggcaaggtcttctccttt |
111 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
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| T |
4236320 |
atgaaacagtggttgaaggcgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatctctgtgatggcaagatcttctccatt |
4236221 |
T |
|
| Q |
112 |
tgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctgat |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
4236220 |
tgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcaccagcattgaaagaagctgat |
4236121 |
T |
|
| Q |
212 |
attggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4236120 |
attggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctattgtaacagttataa |
4236021 |
T |
|
| Q |
312 |
attggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236020 |
attggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttc |
4235921 |
T |
|
| Q |
412 |
agc |
414 |
Q |
| |
|
||| |
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|
| T |
4235920 |
agc |
4235918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 30441333 - 30441396
Alignment:
| Q |
194 |
gcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagaga |
257 |
Q |
| |
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||||||| |||||||| ||||||| |||| ||||||||||||||||| ||||| |||||||||| |
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|
| T |
30441333 |
gcattgatagaagctggtattggaatttccatgggaattcaaggtaccgaagttgcaaaagaga |
30441396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 414
Target Start/End: Complemental strand, 6185444 - 6185042
Alignment:
| Q |
12 |
atgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatatctgtgatggcaaggtcttctccttt |
111 |
Q |
| |
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||||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || | || ||||| ||||||| |||||||||||| || ||||| || |
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| T |
6185444 |
atgaaacggtggttgaaggcgaacaatttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctccatt |
6185345 |
T |
|
| Q |
112 |
tgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctgat |
211 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
6185344 |
tgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccgat |
6185245 |
T |
|
| Q |
212 |
attggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataa |
311 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
6185244 |
atcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatgacaattttgcatctatcgtaacagtgttaa |
6185145 |
T |
|
| Q |
312 |
attggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttc |
411 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||||||||||| |
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| T |
6185144 |
actggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtttc |
6185045 |
T |
|
| Q |
412 |
agc |
414 |
Q |
| |
|
||| |
|
|
| T |
6185044 |
agc |
6185042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 176 - 395
Target Start/End: Complemental strand, 19593039 - 19592829
Alignment:
| Q |
176 |
ggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatat |
275 |
Q |
| |
|
|||| ||| |||||| | ||| ||||||||||| |||||| |||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatat |
19592940 |
T |
|
| Q |
276 |
tagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgt |
375 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
19592939 |
tagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---------agtgaatgt |
19592849 |
T |
|
| Q |
376 |
ggcagcacttgttataaatt |
395 |
Q |
| |
|
||||||||||||||| |||| |
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|
| T |
19592848 |
ggcagcacttgttatcaatt |
19592829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 116 - 393
Target Start/End: Complemental strand, 38357160 - 38356883
Alignment:
| Q |
116 |
aaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctgatattg |
215 |
Q |
| |
|
|||||| | ||||| |||||||||| | | ||||||||||||||||| || || || || || |||||||||||||| || || |||||||||||||| | |
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|
| T |
38357160 |
aaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcacctgccttaaaagaagctgatatag |
38357061 |
T |
|
| Q |
216 |
gactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattg |
315 |
Q |
| |
|
||||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| || || ||||| ||||| || ||| | | ||| ||| ||| || |
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|
| T |
38357060 |
gactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttagacgacaacttcaattctgttgcaactgttttaaggtg |
38356961 |
T |
|
| Q |
316 |
gggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaa |
393 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||||| |||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
38356960 |
gggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgataaa |
38356883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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