View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_170 (Length: 231)
Name: NF9661A_low_170
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_170 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 25671667 - 25671479
Alignment:
| Q |
40 |
ctgattcatctcaaacaaatactagttttgtacatactgaaaatcctgttaaaatttcatcaaaacttgaagaacaagacttgaacaaagaat---catg |
136 |
Q |
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| T |
25671667 |
ctgattcatctcaaacaaatactagttttgtacatactgaaaatcctgttaaaatttcatcaaaacttgaagaacaagacttgaacaaagaactaccatg |
25671568 |
T |
|
| Q |
137 |
gcagcatcaccagcataccaagcacatcttccaacatcaccagaatggttaaacaaaggagacaacgcatggcaaatgacagcagcaac |
225 |
Q |
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| T |
25671567 |
gcagcatcaccagcataccaagcacatcttccaacatcaccagaatggttaaacaaaggagacaacgcatggcaaatgacagcagcaac |
25671479 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 5625741 - 5625687
Alignment:
| Q |
171 |
catcaccagaatggttaaacaaaggagacaacgcatggcaaatgacagcagcaac |
225 |
Q |
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| T |
5625741 |
catcaccacaatggctaaacaaaggagacaactcatggcaaatgacagcatcaac |
5625687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 39726990 - 39726950
Alignment:
| Q |
175 |
accagaatggttaaacaaaggagacaacgcatggcaaatga |
215 |
Q |
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| T |
39726990 |
accagactggttaaacaaaggagacaactcatggcaaatga |
39726950 |
T |
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