View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_171 (Length: 230)
Name: NF9661A_low_171
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_171 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 34401428 - 34401643
Alignment:
| Q |
14 |
gagcatgtttcctaatttcttctaagtaaaggtttgaattttaaggtacacaagatgtgttgggtagtggtcaaaagtcaggaattattaacttctaaat |
113 |
Q |
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| T |
34401428 |
gagcatgtttcctaatttct---aagtaaaggtttgaattttaaggtacacaagatgtgttgggtagtggtcaaaagtcaggaattattaacttctaaat |
34401524 |
T |
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| Q |
114 |
ttgaatacact--tggctgcttaaacagttagtagtgattgttttccattgagtgatttagacctataagttcaatcctgtttcaattcctcctctgcat |
211 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34401525 |
ttgaatacactcttggctgcttaaacagttagtagtgattgttttccattgagtgatttagacctataagttcaatcctgtttcaattcctcctctgcat |
34401624 |
T |
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| Q |
212 |
actgttctgctaaatttga |
230 |
Q |
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| T |
34401625 |
actgttctgctaaatttga |
34401643 |
T |
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