View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9661A_low_173 (Length: 230)
Name: NF9661A_low_173
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_173 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 10033076 - 10032858
Alignment:
| Q |
5 |
cataagcagccaagaaacatcaatctgacatagaagatgcagttgcttcaatcatcatcaacttgagtatggaatatgaaactaggaaatgtggttgtga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10033076 |
cataagcagccaagaaacatcaatctgaca--gaagatgcagttgcttcaatcatcatcaacttgagtatggaatatgaaactaggaaatgtggttgtga |
10032979 |
T |
|
| Q |
105 |
tttctctgcaaacaaacaatttgagagatgttagattgtaaagcttggtaacaaaatgctaatcgatgtttaattaaacatccatttcaccaaaaataga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10032978 |
tttctctgcaaacaaacaatttgagagatgttagattgtaaagcttggtaacaaaatgctaatcgatgtttaattaaacatccatttcaccaaaaataga |
10032879 |
T |
|
| Q |
205 |
ttaggattgagaaacatgctt |
225 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10032878 |
ttaggattgagaaacatgctt |
10032858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 10054988 - 10054770
Alignment:
| Q |
5 |
cataagcagccaagaaacatcaatctgacatagaagatgcagttgcttcaatcatcatcaacttgagtatggaatatgaaactaggaaatgtggttgtga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10054988 |
cataagcagccaagaaacatcaatctgaca--gaagatgcagttgcttcaatcatcatcaacttgagtatggaatatgaaactaggaaatgtggttgtga |
10054891 |
T |
|
| Q |
105 |
tttctctgcaaacaaacaatttgagagatgttagattgtaaagcttggtaacaaaatgctaatcgatgtttaattaaacatccatttcaccaaaaataga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10054890 |
tttctctgcaaacaaacaatttgagagatgttagattgtaaagcttggtaacaaaatgctaatcgatgtttaattaaacatccatttcaccaaaaataga |
10054791 |
T |
|
| Q |
205 |
ttaggattgagaaacatgctt |
225 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10054790 |
ttaggattgagaaacatgctt |
10054770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 10064907 - 10064796
Alignment:
| Q |
5 |
cataagcagccaagaaacatcaatctgacatagaagatgcagttgcttcaatcatcatcaacttgagtatggaatatgaaactaggaaatgtggttgtga |
104 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||||||||| || || ||||||||||| ||||||| ||||||| |
|
|
| T |
10064907 |
cataagcagccaagaaacatcattctgacatagaaaatgcagttacttcaattatcatcaacttgcgtgtgaaatatgaaactgggaaatgcagttgtga |
10064808 |
T |
|
| Q |
105 |
tttctctgcaaa |
116 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10064807 |
tttctctgcaaa |
10064796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 10075484 - 10075377
Alignment:
| Q |
62 |
tcaacttgagtatggaatatgaaactaggaaatgtggttgtgatttctctgcaaacaaa-caatttgagagatgttagattgtaaagcttggtaacaaaa |
160 |
Q |
| |
|
|||||||||| || |||| ||| || |||||| | ||||||||||||||||||| ||| ||||||| ||||||||||| || |||| |||||||||| |
|
|
| T |
10075484 |
tcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttctctgcaaataaaacaatttgtacgatgttagattctagagctaggtaacaaaa |
10075385 |
T |
|
| Q |
161 |
tgctaatc |
168 |
Q |
| |
|
|||||||| |
|
|
| T |
10075384 |
tgctaatc |
10075377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 10259858 - 10259809
Alignment:
| Q |
62 |
tcaacttgagtatggaatatgaaactaggaaatgtggttgtgatttctct |
111 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
10259858 |
tcaacttgagagtgaaatacgaaactaggaaatgtagttgtgatttctct |
10259809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University