View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_180 (Length: 230)
Name: NF9661A_low_180
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_180 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 25933608 - 25933834
Alignment:
| Q |
1 |
tgtttcctttgcaagcaggcttttactaatggaatatgcaacccatcctttaagaattgctacaacattatttgaagcaatggttaagaaccttgagctg |
100 |
Q |
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| T |
25933608 |
tgtttcctttgcaagcaggcttttactaatggaatatgcaacccatcttttaagaattgctacaacattatttgaagcaatggttaagaaccttgagctg |
25933707 |
T |
|
| Q |
101 |
aatctgaaaacaacaaagtcatatttatcagaaaacaatggcaacatacgtgtctatcgttatccacccactgatgttggtttgggcatggaggttcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25933708 |
aatctgaaaacaacaaagtcatatttatcagaaaacaatggcaacatacgtgtctatcgttatccacccactgatgttggttggggcatggaggttcata |
25933807 |
T |
|
| Q |
201 |
cagatagttcagtgttgtccatattga |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
25933808 |
cagatagttcagtgttgtccatattga |
25933834 |
T |
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