View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_185 (Length: 229)

Name: NF9661A_low_185
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_185
NF9661A_low_185
[»] chr4 (10 HSPs)
chr4 (1-229)||(8654756-8654984)
chr4 (2-229)||(47541154-47541381)
chr4 (1-229)||(3129665-3129890)
chr4 (45-229)||(7662966-7663150)
chr4 (27-229)||(2631627-2631829)
chr4 (26-229)||(20675251-20675454)
chr4 (82-229)||(23873240-23873387)
chr4 (82-229)||(55298849-55298996)
chr4 (36-229)||(8486699-8486892)
chr4 (164-229)||(49926112-49926177)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-229)||(134537-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-229)||(312364-312592)
scaffold0002 (1-229)||(327818-328046)
[»] chr5 (5 HSPs)
chr5 (1-229)||(10486603-10486831)
chr5 (3-229)||(34481176-34481402)
chr5 (137-229)||(587745-587837)
chr5 (9-229)||(35122397-35122617)
chr5 (185-221)||(27795720-27795756)
[»] chr3 (11 HSPs)
chr3 (1-229)||(49731615-49731843)
chr3 (1-229)||(30167027-30167255)
chr3 (26-229)||(2813208-2813411)
chr3 (26-229)||(29309637-29309840)
chr3 (26-229)||(6176186-6176389)
chr3 (108-229)||(9379326-9379447)
chr3 (157-229)||(23602002-23602074)
chr3 (165-229)||(25872955-25873019)
chr3 (157-214)||(8943596-8943653)
chr3 (186-224)||(46248738-46248776)
chr3 (185-223)||(48569906-48569944)
[»] chr1 (7 HSPs)
chr1 (1-229)||(21528390-21528622)
chr1 (1-229)||(36306013-36306241)
chr1 (9-229)||(37530795-37531015)
chr1 (82-229)||(32353061-32353208)
chr1 (26-229)||(48073139-48073342)
chr1 (148-229)||(48265548-48265629)
chr1 (157-229)||(30970447-30970519)
[»] chr7 (9 HSPs)
chr7 (1-229)||(15653388-15653616)
chr7 (1-185)||(46623966-46624150)
chr7 (26-229)||(13440282-13440485)
chr7 (1-217)||(12378411-12378627)
chr7 (157-229)||(45943080-45943152)
chr7 (155-223)||(43105546-43105614)
chr7 (9-88)||(17856106-17856185)
chr7 (186-224)||(27723973-27724011)
chr7 (158-223)||(41339760-41339825)
[»] chr8 (5 HSPs)
chr8 (1-229)||(7452581-7452809)
chr8 (27-226)||(16420719-16420918)
chr8 (158-223)||(12134563-12134628)
chr8 (180-229)||(19384572-19384621)
chr8 (185-221)||(13879354-13879390)
[»] chr2 (14 HSPs)
chr2 (1-229)||(45421748-45421977)
chr2 (27-229)||(13550353-13550555)
chr2 (26-228)||(26894320-26894522)
chr2 (26-228)||(26899759-26899961)
chr2 (82-229)||(43627728-43627875)
chr2 (133-229)||(31085452-31085548)
chr2 (133-229)||(33548101-33548197)
chr2 (27-153)||(13550882-13551008)
chr2 (174-229)||(22052856-22052911)
chr2 (174-223)||(36804147-36804196)
chr2 (185-223)||(36804362-36804400)
chr2 (9-92)||(22725129-22725212)
chr2 (27-68)||(26679225-26679266)
chr2 (185-221)||(40176905-40176941)
[»] scaffold0418 (1 HSPs)
scaffold0418 (45-229)||(7904-8088)
[»] chr6 (7 HSPs)
chr6 (15-229)||(25318083-25318297)
chr6 (15-229)||(26205577-26205791)
chr6 (26-229)||(23347175-23347378)
chr6 (82-229)||(15674054-15674205)
chr6 (177-221)||(33630334-33630378)
chr6 (158-221)||(4474935-4474998)
chr6 (199-229)||(1683269-1683299)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-106)||(4232-4337)
[»] scaffold0112 (1 HSPs)
scaffold0112 (158-223)||(15490-15555)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8654756 - 8654984
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654756 gggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 8654855  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654856 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 8654955  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  8654956 ttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 47541381 - 47541154
Alignment:
Q  2 ggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaat 101  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||  |||| |||||||||||||||||||||    
T  47541381 ggttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaat 47541282  T
Q  102 aagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgt 201  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||  ||| ||| ||||||||||||||||| | |||||||||||| |||||||  |||    
T  47541281 aagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgt 47541182  T
Q  202 tagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||||||||||||||||||    
T  47541181 tagcggagtgtagggctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3129665 - 3129890
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  3129665 gggttggagatggagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaa 3129764  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    |||||| |||||||||| ||||||||| ||| ||||||||||||||   ||||||  |||||||||||||||| | ||||||||||||||||||    ||    
T  3129765 taagttcatgtctgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag---atg 3129861  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  3129862 ttagcggagtgtagggctttacttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 7662966 - 7663150
Alignment:
Q  45 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttgttatctgttgattcggagc 144  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||| ||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  145 agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||  |||| |||| ||||||||||| ||||| ||||||||||||||||||||  |||||| |||||||| |||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7663150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 2631829 - 2631627
Alignment:
Q  27 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttgt 126  Q
    |||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||  ||||||     
T  2631829 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc 2631730  T
Q  127 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct 226  Q
    | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  ||||||||||||||||||||    
T  2631729 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttct 2631630  T
Q  227 tga 229  Q
    |||    
T  2631629 tga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 20675454 - 20675251
Alignment:
Q  26 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttg 125  Q
    ||||||||  ||||||||||||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| ||| || ||||  ||||||    
T  20675454 gttttggtctgataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttg 20675355  T
Q  126 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 225  Q
     | | |||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| | |  ||||||||| |||||||||    
T  20675354 ctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttc 20675255  T
Q  226 ttga 229  Q
    ||||    
T  20675254 ttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||||||||||||| |||||| || |  |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  182 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||||||||||||| |||||| || |  |||||| | |||||||||||||||| ||||||||   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  182 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 8486699 - 8486892
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  8486699 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg 8486798  T
Q  136 attcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||| | ||||||||   |||||||||||||||||||||| |||||||||||| |||| ||| |||   ||||||||||||||||||||||    
T  8486799 attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 49926112 - 49926177
Alignment:
Q  164 gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||| || || ||||||  |||||||||||| ||||||| ||||||||||||||| || |||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttga 49926177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 134537 - 134765
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134537 gggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 134636  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134637 taagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 134736  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  134737 ttagcggagtgtagggctttacttcttga 134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 312364 - 312592
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312364 gggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 312463  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312464 taagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 312563  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  312564 ttagcggagtgtagggctttacttcttga 312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 327818 - 328046
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327818 gggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 327917  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327918 taagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 328017  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  328018 ttagcggagtgtagggctttacttcttga 328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10486603 - 10486831
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  10486603 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaa 10486702  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  10486703 taagttcatgtctgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatg 10486802  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  10486803 ttagcggagtgtagggctttacttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 34481402 - 34481176
Alignment:
Q  3 gttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaata 102  Q
    ||||| ||||| |||||||| | ||||||||  ||||||||||||||||| |||||| |||||||  | ||  || || |||||||||||||||||||||    
T  34481402 gttggtgatggggctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaata 34481303  T
Q  103 agtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgtt 202  Q
    ||| ||||||||||| | | ||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||  ||| |    
T  34481302 agtctatgtctgtggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgct 34481203  T
Q  203 agcggagtgtagggctttacttcttga 229  Q
    || ||||||||||||||||||||||||    
T  34481202 agaggagtgtagggctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 587837 - 587745
Alignment:
Q  137 ttcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| ||||||| | | ||||||||||| |||||| | |||  ||||||||||||  |||||| ||||||||||||||||||||||||    
T  587837 ttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtagggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 35122397 - 35122617
Alignment:
Q  9 gatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagttta 108  Q
    ||||| |||||||||||||||||||   |||||||||| |  |||||||||||| |||  || || |||||| ||||||| ||| | ||||| ||    |    
T  35122397 gatggtgctgatacgttgttttggtctcataggtggtttgatgatgttccttttagtgagcggtttcgtaggttgtttgacttagctgagaacaaaacca 35122496  T
Q  109 tgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcgga 208  Q
    | |||||||   |  |||| ||| ||||   ||||||| | ||||||  |||||||||||||||||||||||||   |||||||||   || |||| |||    
T  35122497 tttctgtggcgaatatgttctctcttgacctggagcagggaggggttgggtggaggtggagacgtaggttgtgggcttgggaggagactttattagagga 35122596  T
Q  209 gtgtagggctttacttcttga 229  Q
    |  |||||||||||| |||||    
T  35122597 gcttagggctttactgcttga 35122617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 27795756 - 27795720
Alignment:
Q  185 gtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  27795756 gtgggaggaggacttggtagaggagtgtagggcttta 27795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 49731615 - 49731843
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  49731615 gggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaa 49731714  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    |||||| |||| ||||| ||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |||    
T  49731715 taagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttg 49731814  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    || ||||||||||||||||||||||||||    
T  49731815 ttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 30167027 - 30167255
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||  |||||||||||||||||||    
T  30167027 gggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaa 30167126  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    |||| | |||| ||||| ||||||||| |||||||||  |||||||  ||| ||||| ||||||||||| ||||| ||||||||||||||||||||  ||    
T  30167127 taagctcatgtttgtggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatg 30167226  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||||| |||||||||||||    
T  30167227 ttagcggagtgtaggactttacttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 2813208 - 2813411
Alignment:
Q  26 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttg 125  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || |  ||||||    
T  2813208 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg 2813307  T
Q  126 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 225  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  2813308 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 2813407  T
Q  226 ttga 229  Q
    ||||    
T  2813408 ttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 29309840 - 29309637
Alignment:
Q  26 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttg 125  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| ||||  ||||||    
T  29309840 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttg 29309741  T
Q  126 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 225  Q
     | ||||| |||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  ||||||||||| |||||||    
T  29309740 ctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttc 29309641  T
Q  226 ttga 229  Q
    ||||    
T  29309640 ttga 29309637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 6176186 - 6176389
Alignment:
Q  26 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttg 125  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||| ||||||||||| |||||| || |  ||||||    
T  6176186 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttg 6176285  T
Q  126 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 225  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| | ||||||||||||||| ||| |||  |||||||||||||||||||    
T  6176286 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttc 6176385  T
Q  226 ttga 229  Q
    ||||    
T  6176386 ttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 9379447 - 9379326
Alignment:
Q  108 atgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcgg 207  Q
    |||| ||||| | ||||||| | ||||||||| ||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||   |||||||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  208 agtgtagggctttacttcttga 229  Q
    |||||||||| ||||| |||||    
T  9379347 agtgtagggcattactacttga 9379326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 23602074 - 23602002
Alignment:
Q  157 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 25872955 - 25873019
Alignment:
Q  165 tggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||| ||||||||||||||||  ||| ||| ||||||||||||||||||| ||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttga 25873019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  157 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag 214  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
Q  186 tgggaggaggacttgttagcggagtgtagggctttactt 224  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  46248738 tgggaggaagacttgttaggggagtgtagggctttactt 46248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 48569906 - 48569944
Alignment:
Q  185 gtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  48569906 gtgggaggaggacttggtagaggagtgtagggctttact 48569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 21528622 - 21528390
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21528622 gggttggagatgaagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaa 21528523  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    |||||| |||||||| | ||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||| ||    
T  21528522 taagttcatgtctgttggagacttgttctctgttgattcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatg 21528423  T
Q  201 ttagcggag----tgtagggctttacttcttga 229  Q
    ||||||| |     |||||||||||||||||||    
T  21528422 ttagcggtggagacgtagggctttacttcttga 21528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 36306241 - 36306013
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| |||||    
T  36306241 gggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaa 36306142  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    |||| | |||| ||||| ||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||| |||||||  ||    
T  36306141 taagctcatgtatgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatg 36306042  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||| ||||||||||||||||||||||||    
T  36306041 ttagaggagtgtagggctttacttcttga 36306013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 37531015 - 37530795
Alignment:
Q  9 gatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagttta 108  Q
    ||||| |||||||| | ||||||||  ||||||||||||||||| |||||| |||||||  |  |  || || |||||||||||||||||||||||  ||    
T  37531015 gatggggctgatacttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagacta 37530916  T
Q  109 tgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcgga 208  Q
    ||| ||||| ||||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||  ||| ||| |||    
T  37530915 tgtatgtggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagagga 37530816  T
Q  209 gtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||    
T  37530815 gtgtagggctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||||||||||||| |||||| ||||  |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  182 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||| ||||||| ||| |||  |||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 48073139 - 48073342
Alignment:
Q  26 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttg 125  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || |  ||||||    
T  48073139 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg 48073238  T
Q  126 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 225  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||| ||||||||||||| ||| |||  |||||| ||||||||||||    
T  48073239 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttc 48073338  T
Q  226 ttga 229  Q
    ||||    
T  48073339 ttga 48073342  T

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Target: chr1; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 48265548 - 48265629
Alignment:
Q  148 ggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 30970447 - 30970519
Alignment:
Q  157 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  || | |||||||||||||| |||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttga 30970519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15653388 - 15653616
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||    
T  15653388 gggttggagatggatctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaa 15653487  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    |||| | |||||| ||| ||||||||| |||||||||| |||||||  ||||||||| ||||||||||| ||||| ||||||||||||||||||||  ||    
T  15653488 taagctcatgtctatggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatg 15653587  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  15653588 ttagcggagtgtagggctttacttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 46624150 - 46623966
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| |||||    
T  46624150 gggttagagatggttctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaa 46624051  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcag 185  Q
    |||| | |||||||||| ||||||||| |||||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||||    
T  46624050 taagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggcag 46623966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 13440485 - 13440282
Alignment:
Q  26 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttg 125  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || |  ||||||    
T  13440485 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg 13440386  T
Q  126 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 225  Q
     | |||||||||||||||| ||||||||   ||||||||||||||||||| || ||| ||||||||||||| ||| |||  |||||| ||||||||||||    
T  13440385 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttc 13440286  T
Q  226 ttga 229  Q
    ||||    
T  13440285 ttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 12378411 - 12378627
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||| ||||  ||||||||   ||||||||  ||||||||| |||||||||||||| | ||||  || |  | ||| |||||||||||||  |||||    
T  12378411 gggttggtgatgaggctgatacaacgttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaa 12378510  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    |||| | |||||||||| | | ||||| | |||| | ||| ||| |||||||| ||||| |||| |||| || |||||||||||||||||||||||  ||    
T  12378511 taagatcatgtctgtggcaaatttgttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatg 12378610  T
Q  201 ttagcggagtgtagggc 217  Q
    |||||||||||||||||    
T  12378611 ttagcggagtgtagggc 12378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 45943152 - 45943080
Alignment:
Q  157 tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||| |||| || ||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 43105614 - 43105546
Alignment:
Q  155 tttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    ||||||||||||||| || ||||||||||| |||||||||||  ||||||| ||||||||||| |||||    
T  43105614 tttgtggaggtggaggcgcaggttgtggcaatgggaggaggagatgttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 17856185 - 17856106
Alignment:
Q  9 gatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttga 88  Q
    ||||| |||||||||||||||||||   |||||||||| || |||||||||||| |||  || || |||||| |||||||    
T  17856185 gatggtgctgatacgttgttttggtctcataggtggtttggtgatgttccttttagtgagcggtttcgtaggttgtttga 17856106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
Q  186 tgggaggaggacttgttagcggagtgtagggctttactt 224  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27723973 tgggaggaagacttgttaggggagtgtagggctttactt 27724011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 41339825 - 41339760
Alignment:
Q  158 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||| || | |||||||||  |||||||||||| || |||| |||||||||| |||||||    
T  41339825 gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttact 41339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 7452809 - 7452581
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  7452809 gggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaa 7452710  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 200  Q
    |||| |||||||||||| ||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||||||||||  ||     
T  7452709 taagcttatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgtta 7452610  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||| ||||||||||||||||||||||||    
T  7452609 ttagaggagtgtagggctttacttcttga 7452581  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 16420719 - 16420918
Alignment:
Q  27 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttgt 126  Q
    |||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||  ||||||     
T  16420719 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc 16420818  T
Q  127 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct 226  Q
    | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  ||| ||||||||||||||||    
T  16420819 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  158 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  180 tggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 13879354 - 13879390
Alignment:
Q  185 gtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  13879354 gtgggaggaggacttggtagaggagtgtagggcttta 13879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 45421977 - 45421748
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||  |||||||||||||||||||    
T  45421977 gggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaa 45421878  T
Q  101 taagtttatgtctgtggtagacttgttatctgttgattcggagcag-tggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggactt 199  Q
    |||| | |||| ||||| ||||||||| |||||||||  |||||||  ||||  |||| ||||||||||| ||||| |||| |||||||||||||||  |    
T  45421877 taagctcatgtatgtggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagat 45421778  T
Q  200 gttagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||||||||||| ||||||||    
T  45421777 gttagcggagtgtagggcttttcttcttga 45421748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 13550555 - 13550353
Alignment:
Q  27 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttgt 126  Q
    |||||||| ||||||||| ||||||| | |||| || ||||  | ||  || || |||||||||||||||||||||||| ||| |  ||||  ||||||     
T  13550555 ttttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgc 13550456  T
Q  127 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct 226  Q
    | ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||| ||||||||| ||||    
T  13550455 tttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggctttaattct 13550356  T
Q  227 tga 229  Q
    |||    
T  13550355 tga 13550353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 26894320 - 26894522
Alignment:
Q  26 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttg 125  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||    ||||||    
T  26894320 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg 26894419  T
Q  126 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 225  Q
     | ||||||| |||||||| |||||||    |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  26894420 ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 26894519  T
Q  226 ttg 228  Q
    |||    
T  26894520 ttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 26899759 - 26899961
Alignment:
Q  26 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttg 125  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||    ||||||    
T  26899759 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg 26899858  T
Q  126 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 225  Q
     | ||||||| |||||||| |||||||    |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  26899859 ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 26899958  T
Q  226 ttg 228  Q
    |||    
T  26899959 ttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||||||||||||| |||||  ||||  |||||| | ||| |||||||||||  ||||||||   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  182 gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 31085452 - 31085548
Alignment:
Q  133 ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||| ||||||||||||| | |||||||||||||| | |||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 33548197 - 33548101
Alignment:
Q  133 ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 13551008 - 13550882
Alignment:
Q  27 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttgt 126  Q
    |||||||| ||||||||| ||||||| | |||| || ||||  | ||  || || |||||||||||||||||||||||| ||| |  ||||  ||||||     
T  13551008 ttttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgc 13550909  T
Q  127 tatctgttgattcggagcagtgggggg 153  Q
    | |||||||||||||||||||||||||    
T  13550908 tttctgttgattcggagcagtgggggg 13550882  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 22052911 - 22052856
Alignment:
Q  174 aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 36804196 - 36804147
Alignment:
Q  174 aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttact 36804147  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 36804400 - 36804362
Alignment:
Q  185 gtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttact 36804362  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 22725129 - 22725212
Alignment:
Q  9 gatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagtta 92  Q
    ||||| ||||| ||| |||||||||| ||||| ||||| |||   ||||||||||||||  | ||||||||| |||||||||||    
T  22725129 gatggggctgacacgatgttttggtttgatagatggttggggccggttcctttttgtgtgtgattccgtaggttgtttgagtta 22725212  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 26679266 - 26679225
Alignment:
Q  27 ttttggttggataggtggttaggggatgttcctttttgtgtc 68  Q
    |||||||||||||||||| | || ||||||||||||||||||    
T  26679266 ttttggttggataggtgggttggtgatgttcctttttgtgtc 26679225  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 40176941 - 40176905
Alignment:
Q  185 gtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  40176941 gtgggaggaggacttggtagaggagtgtagggcttta 40176905  T

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Target: scaffold0418 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 8088 - 7904
Alignment:
Q  45 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttgttatctgttgattcggagc 144  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||| ||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  145 agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||  |||| |||| ||||||||||| ||||| ||||||||||||||||||||  |||||| |||||||| |||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7904  T

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Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 25318297 - 25318083
Alignment:
Q  15 gctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctg 114  Q
    |||||||| | ||||||||| ||||||||| || |||| | |||| || ||||  | ||  || || |||||||||||||| |||||||||||||||| |    
T  25318297 gctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaaagaataagtttatgtccg 25318198  T
Q  115 tggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag 214  Q
    |||  |||||| |||||||||||||  ||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||| ||| ||| |||||||||    
T  25318197 tggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggaggagttgctagaggagtgtag 25318098  T
Q  215 ggctttacttcttga 229  Q
    |||||||||||||||    
T  25318097 ggctttacttcttga 25318083  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 26205791 - 26205577
Alignment:
Q  15 gctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctg 114  Q
    |||||||| | ||||||||| ||||||||| || |||| | |||| || ||||  | ||  || || |||||||||||||| |||||||||||||||| |    
T  26205791 gctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaaagaataagtttatgtccg 26205692  T
Q  115 tggtagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag 214  Q
    |||  |||||| |||||||||||||  ||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||| ||| ||| |||||||||    
T  26205691 tggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggaggagttgctagaggagtgtag 26205592  T
Q  215 ggctttacttcttga 229  Q
    |||||||||||||||    
T  26205591 ggctttacttcttga 26205577  T

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Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 23347175 - 23347378
Alignment:
Q  26 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggtagacttg 125  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || |  ||||||    
T  23347175 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttg 23347274  T
Q  126 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc 225  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  23347275 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 23347374  T
Q  226 ttga 229  Q
    ||||    
T  23347375 ttga 23347378  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggtagacttgttatctgttgattcggagcagtgggg----ggttttgtggaggtggagacgtaggt 177  Q
    ||||||||||||| |||||||||| |||||||||||  |||||  | ||||||||||| ||||  |||||    ||   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  178 tgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||||||||| ||| |||  ||||| |||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 33630378 - 33630334
Alignment:
Q  177 ttgtggcagtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggcttta 33630334  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
Q  158 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    |||||||||||||||||||||||||  |||||||||| | || |||| ||||| |||| |||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta 4474935  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 1683299 - 1683269
Alignment:
Q  199 tgttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||||    
T  1683299 tgttagcggagtgtagggctttacttcttga 1683269  T

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Target: scaffold0131 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4232 - 4337
Alignment:
Q  1 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  4232 gggttggagatggagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaa 4331  T
Q  101 taagtt 106  Q
    ||||||    
T  4332 taagtt 4337  T

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Target: scaffold0112 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 15490 - 15555
Alignment:
Q  158 gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||| | || || ||||||  ||||||||||||  |||||| ||||||||||||||||||    
T  15490 gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttact 15555  T

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