View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_186 (Length: 229)
Name: NF9661A_low_186
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_186 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 8696770 - 8696544
Alignment:
| Q |
1 |
tcatagaagcaaccatttatctaaagagatgatagnnnnnnnntcccttttttacgaggcttctctagtagttagttattagtcacacctgcaatacatt |
100 |
Q |
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| T |
8696770 |
tcatagaagcaaccatttatctaaagagatgatagcaaaaa--tcacttttttatgaggcttctctagtagttagttattagtcacacctgtaatacatt |
8696673 |
T |
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| Q |
101 |
cattattataacctttctaaatgaatattcaaagtaaaggataagccaaaaatcttctaagcacacatcaatgtaggtaataggtataaaccaaaaacac |
200 |
Q |
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| T |
8696672 |
cattattataacctttctaaatgaatattcaaagtaaaggatatgccaaaaatcttctaagcacacatcaatgtaggtaataggtataaaccaaaaacac |
8696573 |
T |
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| Q |
201 |
tattttagttcagtgcttcagttttatag |
229 |
Q |
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| T |
8696572 |
tatgttagttcagtgcttcagttttatag |
8696544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 19499 - 19284
Alignment:
| Q |
1 |
tcatagaagcaaccatttatctaaagagatgatagnnnnnnnntcccttttttacgaggcttctctagtagttagttattagtcacacctgcaatacatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
19499 |
tcatagaagcaaccatttatctaaagagatgatagcaaaaa--tcacttttttatgaggcttctctagtagttagttattagtcacatctgtaatacatt |
19402 |
T |
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| Q |
101 |
cattattataacctttctaaatgaatattcaaagtaaaggataagccaaaaatcttctaagcacacatcaatgtaggtaataggtataaaccaaaaacac |
200 |
Q |
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| T |
19401 |
cattattataacctttctaaatgaatattcatagtaaaggatatgccaaaaatcttctaagcacacatcaat-----------gtataaagaaaaaacac |
19313 |
T |
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| Q |
201 |
tattttagttcagtgcttcagttttatag |
229 |
Q |
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| T |
19312 |
tatgttagttcagtgcttcagttttatag |
19284 |
T |
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