View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_19 (Length: 416)
Name: NF9661A_low_19
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 364
Target Start/End: Complemental strand, 32060458 - 32060103
Alignment:
| Q |
9 |
gagatgaacacaaaggtcagaacaaatttgtacccatatcatatatagatcttacaaccttagtcttcaatccatcattataaagcaaccaaacaaagca |
108 |
Q |
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| T |
32060458 |
gagaagaacacaaaggtcagaacgaatttgtacccatatcatatatagatcttacatccttagtcttcaatccatcattataaagcaaccaaacaaagca |
32060359 |
T |
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| Q |
109 |
ttttattctttgagcccctcccatttccaaacattattccaagtagagatacatcaatgtgacatatcgtctaactactattgttaggaggaattttgat |
208 |
Q |
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| T |
32060358 |
ttttattctttgagcccctcccatttccaaacattattccaagtagacatacatcaatgtgacacatcgtctaactactattgttaggaggaattttgat |
32060259 |
T |
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| Q |
209 |
acgcaaatcattagttttgataccattgttgagtcatgaggggagcccaatgaatcatcatgttggactaagagcaaacactcaagtgagtcaaacacta |
308 |
Q |
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| T |
32060258 |
acgcaaatcattagttttgataccattgttgagtcacgaggggagcccagtaaatcatcatgttggaccaagagcaaacactcaagtgagtcaaacacta |
32060159 |
T |
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| Q |
309 |
aatctttatttaaaattttaatacattagatatatcaatcttctcatttatgtgtt |
364 |
Q |
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| T |
32060158 |
gatctttatttaaaattttaatacattagatatatcaatcttctcatttatatgtt |
32060103 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 37258096 - 37258011
Alignment:
| Q |
72 |
tcttcaatccatcattataaagcaaccaaacaaagcattttattctttga-gcccctcccatttccaaacattattccaagtagag |
156 |
Q |
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| T |
37258096 |
tcttcaatccataattgtaaagcagccaaagaaagcattttattttttgaggctcctctcattttcaaacattattccaggtagag |
37258011 |
T |
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