View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_191 (Length: 228)
Name: NF9661A_low_191
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_191 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 43467419 - 43467651
Alignment:
| Q |
1 |
acatggaaagccaaatgcgacatgttcttgttttcttgaaatccttattctcttggaactcgatcaaaactggaagaaatggaaggatgctacactgata |
100 |
Q |
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| T |
43467419 |
acatggaaagccgaatgcgacatgttcttttttccttgaaatccttattctcttggaactcgatcaaaactggaagaaatggaaggatgctacactgata |
43467518 |
T |
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| Q |
101 |
aaggaccaagca-----ccgagtatcatgactccataaaatctttgctttgtccttatcatgattggctgtgtctactcaatatatcttttgcatgcgtc |
195 |
Q |
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| T |
43467519 |
aaggaccaagcaccgagccgagtatcatgactccataaagtctttgctttgtccttatcatgattggctgtgtctactaaatatatcttttgcatgcgtc |
43467618 |
T |
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| Q |
196 |
cttaaagatgcatccaatttgtgctggaactga |
228 |
Q |
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| T |
43467619 |
cttaaagatgcatccaatttgtgcgggaactga |
43467651 |
T |
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