View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_202 (Length: 225)
Name: NF9661A_low_202
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_202 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 54793599 - 54793812
Alignment:
| Q |
12 |
aagaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagcttcgctct |
111 |
Q |
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| T |
54793599 |
aagaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttgtttctcaagaagaagctgggatgaaggccatggagctttgctct |
54793698 |
T |
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| Q |
112 |
gtttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgt |
211 |
Q |
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| T |
54793699 |
gtttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgt |
54793798 |
T |
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| Q |
212 |
ttttgaagtagcta |
225 |
Q |
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| T |
54793799 |
ttttgaagtagcta |
54793812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 52286280 - 52286490
Alignment:
| Q |
12 |
aagaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagcttcgctct |
111 |
Q |
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||||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
52286280 |
aagaatgggagaccttgatcagaaagtttttgtgaatgtctgcaagaaaagatttctttctgaagaagaagctgggatgaaggccatggagctttgctct |
52286379 |
T |
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| Q |
112 |
gtttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgt |
211 |
Q |
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| T |
52286380 |
ttttggcaggagaatgtgaagaattcagcttggcacccttttaaagtcgtcagagagaatgatagccatgtggtatgtaccataaagacatgctctgtgt |
52286479 |
T |
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| Q |
212 |
ttttgaagtag |
222 |
Q |
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| T |
52286480 |
ttttgcagtag |
52286490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 54775932 - 54775827
Alignment:
| Q |
120 |
ggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgtttttgaag |
219 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775932 |
ggagcatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgtttttgaag |
54775833 |
T |
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| Q |
220 |
tagcta |
225 |
Q |
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|||||| |
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| T |
54775832 |
tagcta |
54775827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 801450 - 801656
Alignment:
| Q |
16 |
atgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagcttcgctctgttt |
115 |
Q |
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| T |
801450 |
atgggagaccttgaccagaaggtttttgtgaatgcctgcaagaaaagattttcttct---gatgaagctgggataaaggccgttgagctttgctctttat |
801546 |
T |
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| Q |
116 |
ggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttttt |
215 |
Q |
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||||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||| | | |||||||||| ||||| |||||||||||||||| |
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| T |
801547 |
ggcaggaaaatgtgaagaactcagcttggcacccttttaaagtggtcagtcagaatgataaccccgtggtatgtaccctaaagccatgctctgtgttttt |
801646 |
T |
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| Q |
216 |
gaagtagcta |
225 |
Q |
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| T |
801647 |
ggagtggcta |
801656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 54775982 - 54775950
Alignment:
| Q |
12 |
aagaatgggagaccttgatgagaaggtttttgt |
44 |
Q |
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| T |
54775982 |
aagaatgggagaccttgatgagaaggtttttgt |
54775950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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