View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_208 (Length: 223)
Name: NF9661A_low_208
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_208 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 36017747 - 36017530
Alignment:
| Q |
6 |
atacataacatatacctttgatcgaaagggtgtcacttcatttctagaatagaagaatactattaggataat-----------gatcaaaagggtattac |
94 |
Q |
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| T |
36017747 |
atacataacatatacctttgatcaaaagggtgtcacttcatttctagaatagaagaacactattaggataataatcaaataatgatcaaaagggtattac |
36017648 |
T |
|
| Q |
95 |
ttcgcccttagtaaagaaacaaccagaaggaccattatttgacagtagtgccaacattaaaggagtttcaacacattcatcaatgcttaaatttccaata |
194 |
Q |
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| T |
36017647 |
ttcacccttagtaaagaaacaaccagaaggaccattatttgacaatagtgccaacattaaaggagtttcaacaccttcatcaatgcttaaatttccaata |
36017548 |
T |
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| Q |
195 |
ttgttattcatctcagtc |
212 |
Q |
| |
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||||||||||| |||||| |
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| T |
36017547 |
ttgttattcatatcagtc |
36017530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 28889564 - 28889355
Alignment:
| Q |
6 |
atacataacatatacctttgatcgaaagggtgtcacttcatttctagaatagaagaatactattaggataat---gatcaaaagggtattacttcgccct |
102 |
Q |
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|||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||| |||| |
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| T |
28889564 |
atacataacataaacttttgatcaaaagggtgtcacttcatttctagaatataagaacactattaggataataatgatcaaaaggatattacttcaccct |
28889465 |
T |
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| Q |
103 |
tagtaaagaaacaaccagaaggaccattatttgacagtagtgccaacattaaaggagtttcaacacattcatcaatgcttaaatttccaatattgttatt |
202 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
28889464 |
tattaaagaaacaaccagaaggaccattatttgaccatagtgccaacattaaaggagtttcaacaccttcatcaatgcttaagtttccaatattgttatt |
28889365 |
T |
|
| Q |
203 |
catctcagtc |
212 |
Q |
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||| |||||| |
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| T |
28889364 |
catatcagtc |
28889355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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