View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_21 (Length: 406)
Name: NF9661A_low_21
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 358
Target Start/End: Original strand, 39956376 - 39956731
Alignment:
| Q |
6 |
aaaccaaaccactctaaactctccaaacccctttactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaac |
105 |
Q |
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| T |
39956376 |
aaaccaaaccactctaaactctcgaaacccctttactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaac |
39956475 |
T |
|
| Q |
106 |
aaaaaccaaacactcaacacaaccacactcttcactcat---cttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaac |
202 |
Q |
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| T |
39956476 |
aaaaaccaaacactcaacacaaccacacttttcactcatcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaac |
39956575 |
T |
|
| Q |
203 |
aacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggctatagtagtgagtatcatgtt |
302 |
Q |
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| T |
39956576 |
aacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggctagggcaatagtcgtgagtatcatgct |
39956675 |
T |
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| Q |
303 |
atcagtgatgttctctttcatttttatgaagctgaatctcactactgggattattc |
358 |
Q |
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| T |
39956676 |
atcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
39956731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 75 - 402
Target Start/End: Original strand, 39940766 - 39941094
Alignment:
| Q |
75 |
acgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactca-acacaaccacactcttcactcatcttcatcgtaacatggcttcagaacctca |
173 |
Q |
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| T |
39940766 |
acgaaagcgacttcattaacaatcgcaaaatcaaaaccaaacactctgatacaaccacactcttcactcatcttcatcgtaacatggctccagaacctca |
39940865 |
T |
|
| Q |
174 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacg |
273 |
Q |
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| T |
39940866 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaaacaggttact |
39940965 |
T |
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| Q |
274 |
gttagggctatagtagtgagtatcatgttatcagtgatgttctctttcatttttatgaagctgaatctcactactgggattattccctctttgaatgttt |
373 |
Q |
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| T |
39940966 |
gttagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgttt |
39941065 |
T |
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| Q |
374 |
cggctgggttgttagggttcatctctgtc |
402 |
Q |
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| T |
39941066 |
cggctgggttgttagggttcttctttgtc |
39941094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 196 - 392
Target Start/End: Complemental strand, 28750890 - 28750694
Alignment:
| Q |
196 |
gatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggctatagtagtgagta |
295 |
Q |
| |
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||||||||||| || |||||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||| || |||||||| ||| | | |||| |
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| T |
28750890 |
gatgaacaactcgaggagatttctgtggaaaaagggtttgaaggaacatctgttcctacgtggcagaaacaggtcactgttagggcaatatttgcgagtc |
28750791 |
T |
|
| Q |
296 |
tcatgttatcagtgatgttctctttcatttttatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggtt |
392 |
Q |
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| T |
28750790 |
tcatgttgtcggtgatgttcacgtttatcgtgatgaagttgaatctcacaactgggattattccttcgttgaatgtttctgctggattgttagggtt |
28750694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 221 - 392
Target Start/End: Complemental strand, 28742020 - 28741849
Alignment:
| Q |
221 |
ttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggctatagtagtgagtatcatgttatcagtgatgttctcttt |
320 |
Q |
| |
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||||||| ||||||||||||||| ||||||| |||||||||| |||||||| |||||||| || | |||||| ||||||| || || |||||| | || |
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| T |
28742020 |
ttgaaaaagggtttgaaggaaaacttgttcctacgtggcagaagcaggttactgttagggcattattcgtgagtctcatgttgtcggtaatgttcacgtt |
28741921 |
T |
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| Q |
321 |
catttttatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggtt |
392 |
Q |
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| T |
28741920 |
cattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggttgttagggtt |
28741849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 389
Target Start/End: Complemental strand, 7963852 - 7963656
Alignment:
| Q |
195 |
cgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaa-tctgttccttcgtggcagaaacaggttacggttagggctatagtagtgag |
293 |
Q |
| |
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|||||||||| | || ||||||| || ||||| | ||||||||||||| || ||||| ||||||||| | |||| ||||||| ||||| | ||||| |
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| T |
7963852 |
cgatgaacaattagaggagatttatgtggaaaaagtgtttgaaggaaaaatcaattcctatatggcagaaaaatgttatggttaggcctatattcgtgag |
7963753 |
T |
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| Q |
294 |
tatcatgtta-tcagtgatgttctctttcatttttatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagg |
389 |
Q |
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| T |
7963752 |
tctcatgttggtcgatgatgttcacattcatcatgatgaatctgaatctcacaactgggattattcattcgttgaatgtttttgctgggttgttagg |
7963656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 379
Target Start/End: Complemental strand, 7961298 - 7961143
Alignment:
| Q |
224 |
aaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggctatagtagtgagtatcatgttatcagtgatgttctctttcat |
323 |
Q |
| |
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|||| ||||||||||||||||| |||||| |||||| || | || ||||||| ||||||| | |||||| || | || | || |||||| | ||||| |
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| T |
7961298 |
aaaaagggtttgaaggaaaatcagttcctatgtggcaccaaaatgtcacggttatggctatattcgtgagtctcgttttgacggtaatgttcacattcat |
7961199 |
T |
|
| Q |
324 |
ttttatgaagctgaatctcactactgggattattccctctttgaatgtttcggctg |
379 |
Q |
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| T |
7961198 |
cgtgatgaagctcaatctcacaactggaattattccttcattaaatgtttctgctg |
7961143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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