View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_213 (Length: 218)
Name: NF9661A_low_213
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_213 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 32879940 - 32880109
Alignment:
| Q |
29 |
aaccacgaaagggtgtagactccacttgacaaagatctatacactatagatgatttagaagaatatgtataaagacattcatatgtctttttgatttaga |
128 |
Q |
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| T |
32879940 |
aaccacgaaagggtgtagactccacttgacaaagatctatacactatagatgatttagaagaatatgtataaagtcattcatatgtctttttgatttaga |
32880039 |
T |
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| Q |
129 |
atctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgggtcaccttaattatctt |
198 |
Q |
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| T |
32880040 |
atctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt |
32880109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 32898809 - 32898981
Alignment:
| Q |
26 |
atgaaccacgaaagggtgtagactccacttgacaaagatctatacactatagatgatttagaagaatatgtataaagacattcatatgtctttttgattt |
125 |
Q |
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| T |
32898809 |
atgaaccacgaaaggatgtagactccacttgacaaagatctatacactatagatgatttagaagaatgtgtataaagtcattcatatgtctttttgattt |
32898908 |
T |
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| Q |
126 |
agaatctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgggtcaccttaattatctt |
198 |
Q |
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| T |
32898909 |
agaatctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt |
32898981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 32884770 - 32884937
Alignment:
| Q |
26 |
atgaaccacgaaagggtgtagactccacttgacaaagatctatacactatagatgatttagaagaatatgtataaagacattcatatgtctttttgattt |
125 |
Q |
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| T |
32884770 |
atgaaccacgaatggatgtacactccacttgacaaagatatatgaa----acatgatttagaagaatatgtataaaggcattcatatgtcttttttatat |
32884865 |
T |
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| Q |
126 |
agaatctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgggtcaccttaattatctt |
198 |
Q |
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| T |
32884866 |
agaatctcctcct-cttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt |
32884937 |
T |
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