View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_218 (Length: 214)
Name: NF9661A_low_218
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_218 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 3586705 - 3586897
Alignment:
| Q |
21 |
ggacatgcttattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttctt |
120 |
Q |
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| T |
3586705 |
ggacatgcttattcttcttaactgttcccgcattttctacatgtttatcttaact-ttcccgcattttttatttgcctatatatataagttattcttctt |
3586803 |
T |
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| Q |
121 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatctattttattttgtt |
214 |
Q |
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| T |
3586804 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttttcagatctgcaggtactattttttaccgcatctatttcattttgtt |
3586897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 9789750 - 9789568
Alignment:
| Q |
32 |
ttcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttccca |
131 |
Q |
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| T |
9789750 |
ttcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttccca |
9789651 |
T |
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| Q |
132 |
catctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatctattttattttgtt |
214 |
Q |
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| T |
9789650 |
catatcttcaacctagctgctgctgttgtcagacttttcagatctacaggtactatttttcactgcatctattttattttgtt |
9789568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 44504580 - 44504745
Alignment:
| Q |
43 |
tgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttcccacatctcttcaa |
142 |
Q |
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|||||| |||||||||||||| |||||| |||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
44504580 |
tgttcccgcattttctacatgtttatctcaactgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttcccacatctcttcaa |
44504679 |
T |
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| Q |
143 |
cctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatctattttattttgtt |
214 |
Q |
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| T |
44504680 |
cttagctgctgctgttgtcagacttttcagatc------tactatttttcactgcatctatattattttgtt |
44504745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 31678513 - 31678629
Alignment:
| Q |
98 |
tatagatataagttatttttcttaaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgc |
197 |
Q |
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|||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| || |
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| T |
31678513 |
tatatatataagttattcttcttaaccgttcccacatcttttcaacctagctgctgctgttgtcagacttttcagatctacaggtacgatttttcaccgc |
31678612 |
T |
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| Q |
198 |
atctattttattttgtt |
214 |
Q |
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| T |
31678613 |
atctattttattttgtt |
31678629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 31678375 - 31678441
Alignment:
| Q |
21 |
ggacatgcttattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattt |
87 |
Q |
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|||||||||||| |||||||| |||||| |||||||||||||||||||||||| | ||||||||||| |
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| T |
31678375 |
ggacatgcttatgcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattt |
31678441 |
T |
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