View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_223 (Length: 210)
Name: NF9661A_low_223
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_223 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 31502804 - 31502655
Alignment:
| Q |
41 |
aatatatcaatataagatgggacatgtctataccgcataaagtcttgtgtgatgatccatatatatttcaagctctttcctttggaattgcacttataaa |
140 |
Q |
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| T |
31502804 |
aatatatcaatataggatgggacatgtctacaccgtataaagtcttgtgtgatgatccatatatatttcaagctctttcctttggaattgcacttataaa |
31502705 |
T |
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| Q |
141 |
atgtggaagtacacactaccttttatgtgcattttactcttctttttact |
190 |
Q |
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| T |
31502704 |
atgtggaagtacacactaccttttatgtgcattttactcttctttttact |
31502655 |
T |
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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 29276174 - 29276331
Alignment:
| Q |
41 |
aatatatcaatataagatgggacatgtctataccgcataaagtcttgtgtgatgatccatatatatttcaagctctttcctttgga----------attg |
130 |
Q |
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| T |
29276174 |
aatatatcaatataagatgggacatgtctataccgtataaagtct--tgtgatgatccatatatatttcaagctcttcccttaggaatatgatactattg |
29276271 |
T |
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| Q |
131 |
cacttataaaatgtggaagtacacactaccttttatgtgcattttactcttctttttact |
190 |
Q |
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| T |
29276272 |
cacttattaaatgtacaaatacacactaccctttgtgtgcattttactcttctttttact |
29276331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 55858418 - 55858267
Alignment:
| Q |
41 |
aatatatcaatataagatgggacatgtctataccgcataaagtcttgtgtgatgatccatatatatttcaagctctttcctttgga----------attg |
130 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||| |
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| T |
55858418 |
aatatatcaatataagatgggacatgtctataccgtataaagtct--tgtgatgatccatatatatttcaagctcttaccttaggaatatgatactattg |
55858321 |
T |
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| Q |
131 |
cacttataaaatgtggaagtacacactaccttttatgtgcattttactcttctt |
184 |
Q |
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||||||| |||||| || ||||||||||| ||| ||||||||||||||||||| |
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| T |
55858320 |
cacttattaaatgtacaaatacacactaccctttgtgtgcattttactcttctt |
55858267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 27959 - 27919
Alignment:
| Q |
150 |
tacacactaccttttatgtgcattttactcttctttttact |
190 |
Q |
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| T |
27959 |
tacacactaccttttatgtgcattttactcttctttttact |
27919 |
T |
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