View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_225 (Length: 210)

Name: NF9661A_low_225
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_225
NF9661A_low_225
[»] chr5 (5 HSPs)
chr5 (15-170)||(26072688-26072843)
chr5 (26-151)||(27166152-27166277)
chr5 (50-166)||(33385598-33385714)
chr5 (24-151)||(18089959-18090086)
chr5 (49-166)||(25857647-25857764)
[»] chr3 (9 HSPs)
chr3 (24-163)||(17098074-17098213)
chr3 (90-167)||(15312382-15312459)
chr3 (50-164)||(29523969-29524083)
chr3 (50-166)||(12342449-12342565)
chr3 (50-166)||(36801299-36801415)
chr3 (51-151)||(3140667-3140767)
chr3 (50-166)||(33496347-33496463)
chr3 (24-166)||(7031215-7031357)
chr3 (50-151)||(26771213-26771314)
[»] chr2 (3 HSPs)
chr2 (24-151)||(15917469-15917596)
chr2 (50-137)||(42563267-42563354)
chr2 (50-151)||(11000174-11000275)
[»] chr6 (10 HSPs)
chr6 (22-158)||(18682701-18682837)
chr6 (24-147)||(17330781-17330904)
chr6 (50-166)||(21630333-21630449)
chr6 (24-151)||(20883231-20883358)
chr6 (50-151)||(15959037-15959139)
chr6 (50-166)||(17606558-17606674)
chr6 (24-166)||(17579279-17579421)
chr6 (85-166)||(215203-215284)
chr6 (70-151)||(11462228-11462309)
chr6 (24-164)||(17573853-17573993)
[»] chr1 (2 HSPs)
chr1 (17-156)||(2491022-2491161)
chr1 (50-166)||(43388167-43388283)
[»] chr4 (8 HSPs)
chr4 (50-166)||(4548443-4548559)
chr4 (22-151)||(7403728-7403857)
chr4 (24-157)||(48242186-48242319)
chr4 (50-166)||(8360900-8361016)
chr4 (90-167)||(5790356-5790433)
chr4 (24-151)||(46145490-46145617)
chr4 (24-158)||(19740238-19740372)
chr4 (50-166)||(12697613-12697729)
[»] chr8 (4 HSPs)
chr8 (50-166)||(37433932-37434048)
chr8 (24-151)||(2170155-2170282)
chr8 (24-103)||(5181533-5181612)
chr8 (50-151)||(17699297-17699398)
[»] chr7 (2 HSPs)
chr7 (19-166)||(18530310-18530457)
chr7 (24-163)||(37254561-37254700)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 26072843 - 26072688
Alignment:
Q  15 atggacatcaatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggtta 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  26072843 atggacatcaatcatctgtttctgtcttgtccttcttttggtgcgttgtggccattggtgtggtcatggctcggtgttgaaggggtcgaatctcaggtta 26072744  T
Q  115 tttcagaccattttttgcaatttgttcattatgcaggcggtttggaatcgcggcat 170  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||    
T  26072743 tttcagaccatttcttgcaatttattcattatgcaggcggtttgaaatcgcggcat 26072688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 27166152 - 27166277
Alignment:
Q  26 tcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccat 125  Q
    |||| |||||||||||| |||  |||| || ||||||||||  ||| || || |||| |||||| |||||||||| || | ||||||||||||||| ||     
T  27166152 tcatttgtttctgtcttgtccaactttcggcgcgttgtggcagttgatgcgggcatgacttggttttgaaggggtggactctcaggttatttcagatcac 27166251  T
Q  126 tttttgcaatttgttcattatgcagg 151  Q
    || |||||||||  | ||||||||||    
T  27166252 ttcttgcaatttagtaattatgcagg 27166277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 33385598 - 33385714
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| |||||||| ||||||||| | ||||||||||| ||| | || || | ||| | ||| ||||| |||||| |||||||| || |||||| |    
T  33385598 ttttggtgcattgtggcctttggtgtgggcttggcttggtgtcgaatgagtagattctcatgctatctcagatcattttgtgcaatttattgattatgta 33385697  T
Q  150 ggcggtttggaatcgcg 166  Q
    || || ||| |||||||    
T  33385698 ggtggcttgaaatcgcg 33385714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 18089959 - 18090086
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||||||||| ||||||  ||   |||||| ||||||||||| |||||  ||   ||||| |||||||| ||||  ||   ||||||||||||| |||    
T  18089959 aatcatctgtttttgtcttgcccggtttttggagcgttgtggcctttggttagggattggctcggtgttgagggggcggagagtcaggttatttcatacc 18090058  T
Q  124 attttttgcaatttgttcattatgcagg 151  Q
    | || ||||||||| |||||||||||||    
T  18090059 acttcttgcaatttattcattatgcagg 18090086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 25857647 - 25857764
Alignment:
Q  49 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 148  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | |||||    
T  25857647 cttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgc 25857746  T
Q  149 aggcggtttggaatcgcg 166  Q
    ||| || ||| |||||||    
T  25857747 aggtggcttgaaatcgcg 25857764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 17098074 - 17098213
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||||||||||| |||| ||| |||||||||||||||||| | ||||||  |  |||||| ||||||||||||||||||| ||| |||||||||||||    
T  17098074 aatcatctgtttctatcttgtccatcttttggtgcgttgtggtcgttggtgcagatatggctcggtgttgaaggggtcgaatctcaagttatttcagacc 17098173  T
Q  124 attttttgcaatttgttcattatgcaggcggtttggaatc 163  Q
    |||| ||||||||| ||||||| ||||| |||||| ||||    
T  17098174 atttcttgcaatttattcattacgcaggtggtttgaaatc 17098213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 15312459 - 15312382
Alignment:
Q  90 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttggaatcgcgg 167  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||| | |||||| ||||||||    
T  15312459 gttgaaggggtcgaatctcaggttatttcagaccatttctcgcaatttattcattatgcatgtggtttgaaatcgcgg 15312382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 29523969 - 29524083
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| |||||||| ||||||||| | ||||||||||| ||||||||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  29523969 ttttggtgcattgtggcctttggtgtgggcttggcttggtgtcgaaggggtcgattctcataatatctcagatcattttgtgcaatttattgaatatgca 29524068  T
Q  150 ggcggtttggaatcg 164  Q
    || |||||| |||||    
T  29524069 ggtggtttgaaatcg 29524083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 12342449 - 12342565
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||| |||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  12342449 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaagaggtcgattctcatactatctcagatcattttgtgcaatttattgaatatgca 12342548  T
Q  150 ggcggtttggaatcgcg 166  Q
    || |||||| |||||||    
T  12342549 ggtggtttgaaatcgcg 12342565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 36801299 - 36801415
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  36801299 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 36801398  T
Q  150 ggcggtttggaatcgcg 166  Q
    || || ||| |||||||    
T  36801399 ggtggcttgaaatcgcg 36801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 3140767 - 3140667
Alignment:
Q  51 tttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcag 150  Q
    |||||||||||||||||  ||||| |  | |||||||||||||  |||||||||  |||| | ||   ||||||||||||||||||| || |||||||||    
T  3140767 tttggtgcgttgtggccgatggtgcgagcttggcttggtgttgttggggtcgaaactcagttcataaaagaccattttttgcaatttattaattatgcag 3140668  T
Q  151 g 151  Q
    |    
T  3140667 g 3140667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 33496463 - 33496347
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||  |||||| |||||||| || | ||||||    
T  33496463 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagctcattttgtgcaatttattgaatatgca 33496364  T
Q  150 ggcggtttggaatcgcg 166  Q
    || | |||| |||||||    
T  33496363 ggtgatttgaaatcgcg 33496347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 7031215 - 7031357
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||| | ||| |||||| |||  |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| |    
T  7031215 aatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatgtcagatc 7031314  T
Q  124 attttttgcaatttgttcattatgcaggcggtttggaatcgcg 166  Q
    | ||| |||||||| || | |||||||| || ||| |||||||    
T  7031315 actttgtgcaatttattgaatatgcaggtggcttgaaatcgcg 7031357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 26771213 - 26771314
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    |||| |||| || |||||||||||| || | ||| |||| ||||||||||| ||   ||||  |||||| ||| |||||||||||||| ||||||| |||    
T  26771213 ttttagtgccttatggccattggtgagggcttggtttggggttgaaggggttgatcctcagcatatttcggacaattttttgcaatttattcattacgca 26771312  T
Q  150 gg 151  Q
    ||    
T  26771313 gg 26771314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 15917596 - 15917469
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||| ||||| |||||| |||  ||||||| ||||||||||||||||||  | |||||||  |||||| ||||||||  | ||||| |||||||||||    
T  15917596 aatcatatgtttttgtcttgtccaacttttggcgcgttgtggccattggtgcaggcatggctcagtgttgtaggggtcggttctcaggctatttcagacc 15917497  T
Q  124 attttttgcaatttgttcattatgcagg 151  Q
    |||||||||||||| |||||||||||||    
T  15917496 attttttgcaatttattcattatgcagg 15917469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 42563354 - 42563267
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaattt 137  Q
    |||||||||||||||| | |||||  || | ||||| ||||| | | ||||||| | ||||||||||||||||||||| |||||||||    
T  42563354 ttttggtgcgttgtggtcgttggtccgggcttggctcggtgtagtatgggtcgattctcaggttatttcagaccatttcttgcaattt 42563267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 11000174 - 11000275
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| ||||||||  ||||| || ||||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  11000174 ttttggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 11000273  T
Q  150 gg 151  Q
    ||    
T  11000274 gg 11000275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 18682701 - 18682837
Alignment:
Q  22 tcaatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcaga 121  Q
    ||||| |||||||| |||||| ||| | |||||||||| ||||||| |||||   ||| ||||||||  | |  |||||||||| |||||||||||||||    
T  18682701 tcaattatctgtttttgtcttgtccgtattttggtgcgctgtggccgttggttcagtcttggcttggcatagttggggtcgaatctcaggttatttcaga 18682800  T
Q  122 ccattttttgcaatttgttcattatgcaggcggtttg 158  Q
    |||||| ||||||||  || |||||||||| ||||||    
T  18682801 ccatttcttgcaattcattaattatgcaggtggtttg 18682837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 17330904 - 17330781
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||| ||||| |||||| ||  | |||||||||| ||||||| ||| || || ||||||| ||||||| ||    |||   |||||||||||||||||    
T  17330904 aatcatttgtttttgtcttgtcagtattttggtgcgctgtggcctttgatgcgggcatggctcggtgttgcagacaccgagagtcaggttatttcagacc 17330805  T
Q  124 attttttgcaatttgttcattatg 147  Q
    |||||||||||||| |||||||||    
T  17330804 attttttgcaatttattcattatg 17330781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 21630333 - 21630449
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| |||||||| |||||| || | ||||||||||| ||||||||||| | |||   ||||||||| |||| | |||||||| || | ||||||    
T  21630333 ttttggtgctttgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatttcagatcattgtgtgcaatttattgaatatgca 21630432  T
Q  150 ggcggtttggaatcgcg 166  Q
    || | |||| |||||||    
T  21630433 ggtgttttgaaatcgcg 21630449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 20883231 - 20883358
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||| ||||| |||||| |||   ||| ||||| ||||||||  ||||| || ||||||||||||| |||||||| || | ||| | ||| |||||||    
T  20883231 aatcatatgtttttgtcttgtccaattttcggtgcattgtggcctatggtgcggacatggcttggtgtcgaaggggtagattctcatgctatctcagacc 20883330  T
Q  124 attttttgcaatttgttcattatgcagg 151  Q
    ||||| |||||||| || | ||||||||    
T  20883331 attttgtgcaatttattgaatatgcagg 20883358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 15959037 - 15959139
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtg-gtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 148  Q
    ||||||||| || |||||||||||| | | | |||||||| |||||||||||  |   ||||  ||||||||||||||||| ||||||||||||||| ||    
T  15959037 ttttggtgccttatggccattggtgagaggcttggcttggggttgaaggggttcatcctcagcatatttcagaccatttttcgcaatttgttcattacgc 15959136  T
Q  149 agg 151  Q
    |||    
T  15959137 agg 15959139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 17606558 - 17606674
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| |||||| | |||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | ||||||    
T  17606558 ttttggtgcattgtggtctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgca 17606657  T
Q  150 ggcggtttggaatcgcg 166  Q
    || |||||| |||||||    
T  17606658 ggtggtttgaaatcgcg 17606674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 17579279 - 17579421
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||| | ||| |||||| |||  |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| |    
T  17579279 aatcatttatttttgtcttgtccgacttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatc 17579378  T
Q  124 attttttgcaatttgttcattatgcaggcggtttggaatcgcg 166  Q
    | ||| |||||||| || | |||||||| || ||| |||||||    
T  17579379 actttgtgcaatttattgaatatgcaggtggcttgaaatcgcg 17579421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 215284 - 215203
Alignment:
Q  85 ttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttggaatcgcg 166  Q
    |||||||||||||||| || | ||| | ||| ||||| |||||| |||||||| || | |||||||| |||||| |||||||    
T  215284 ttggtgttgaaggggtagattttcatgctatctcagatcattttgtgcaatttattgaatatgcaggtggtttgaaatcgcg 215203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 11462309 - 11462228
Alignment:
Q  70 tggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcagg 151  Q
    ||||| || ||||||||||||| |||||||| || | ||| ||||| ||||| |||||| |||||||| || | ||||||||    
T  11462309 tggtgcgggcatggcttggtgtcgaaggggtagattctcatgttatctcagatcattttgtgcaatttattgaatatgcagg 11462228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 17573853 - 17573993
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||| | ||| |||||| |||  |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| |    
T  17573853 aatcatttatttttgtcttgtccgacttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatc 17573952  T
Q  124 attttttgcaatttgttcattatgcaggcggtttggaatcg 164  Q
    | ||| |||||||| || | |||||||| || ||| |||||    
T  17573953 actttgtgcaatttattgaatatgcaggtggcttgaaatcg 17573993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 2491161 - 2491022
Alignment:
Q  17 ggacatcaatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatt 116  Q
    |||| |||||||||| |||||||||| ||| |  |||||||||||||||||  |||||||  | |||||||||||||| |||||||||  |||| | ||     
T  2491161 ggacgtcaatcatctttttctgtcttgtccgtactttggtgcgttgtggccgatggtgtgagcttggcttggtgttgatggggtcgaaactcagttcata 2491062  T
Q  117 tcagaccattttttgcaatttgttcattatgcaggcggtt 156  Q
     ||||||||| |||||| ||| || |||||||||| ||||    
T  2491061 acagaccattgtttgcagtttattaattatgcaggtggtt 2491022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 43388283 - 43388167
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| |||||||| |||||| || | ||||||||||| ||||||||||| | |||   ||| ||| | || ||| |||||||| || | ||||||    
T  43388283 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcatatcactttgtgcaatttattgaatatgca 43388184  T
Q  150 ggcggtttggaatcgcg 166  Q
    || |||||| |||||||    
T  43388183 ggtggtttgaaatcgcg 43388167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 4548443 - 4548559
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| ||||||||  |||||||| | ||||||||||| ||||||||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  4548443 ttttggtgcattgtggcctctggtgtgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcattttgtgcaatttattgaatatgca 4548542  T
Q  150 ggcggtttggaatcgcg 166  Q
    || |||||| |||||||    
T  4548543 ggtggtttgaaatcgcg 4548559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 7403857 - 7403728
Alignment:
Q  22 tcaatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcaga 121  Q
    |||||||| ||||| |||||| |||  ||||| |||| || ||||||||||||||| ||||||| || || | ||||||||| | |||    | ||||||    
T  7403857 tcaatcatttgtttttgtcttgtccaacttttagtgccttatggccattggtgtgggcatggctcggagtggtaggggtcgactctcaatcaacttcaga 7403758  T
Q  122 ccattttttgcaatttgttcattatgcagg 151  Q
     ||||||||||||||| || ||||||||||    
T  7403757 tcattttttgcaatttattaattatgcagg 7403728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 48242319 - 48242186
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    ||||||||||||||| ||| ||| |||| ||||||| | ||| | || ||| || | |||||  | ||||||||||| |||| ||||||||||||||||     
T  48242319 aatcatctgtttctgacttgtccatcttatggtgcgctttggtcgttagtgcgggcgtggctcagagttgaaggggttgaatctcaggttatttcagaca 48242220  T
Q  124 attttttgcaatttgttcattatgcaggcggttt 157  Q
    |||| | ||||||| | |||||||| || |||||    
T  48242219 atttctcgcaatttatccattatgctggtggttt 48242186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 8361016 - 8360900
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| | |||||| || | ||||||    
T  8361016 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgttcaatttattgaatatgca 8360917  T
Q  150 ggcggtttggaatcgcg 166  Q
    || |||||| |||||||    
T  8360916 ggtggtttgaaatcgcg 8360900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 5790356 - 5790433
Alignment:
Q  90 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttggaatcgcgg 167  Q
    ||||||||||  |||| ||||||||| ||||||||||| | ||||||| | |||||||| || |||||| ||||||||    
T  5790356 gttgaaggggctgaatctcaggttatctcagaccatttctcgcaatttatccattatgctggtggtttgcaatcgcgg 5790433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 46145617 - 46145490
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||||| ||| |||||| ||| |  |||| || |||||||||  ||||| |  | |||||||||||||  |||||||||  |||| | ||  ||||||    
T  46145617 aatcatctatttttgtcttgtccgtactttgatgtgttgtggccgatggtgcgagcttggcttggtgttgttggggtcgaaactcagttcataacagacc 46145518  T
Q  124 attttttgcaatttgttcattatgcagg 151  Q
    |||||||||||||| || ||||||||||    
T  46145517 attttttgcaatttattaattatgcagg 46145490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 19740238 - 19740372
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||||| ||| |||||| |||||  ||||||||||||||| |  ||||| |  | ||||||||||| |  |||||||||  |||| ||||  ||||||    
T  19740238 aatcatctatttttgtcttgtccttactttggtgcgttgtggtcgatggtgcgagcttggcttggtgtggttggggtcgaaactcagtttatagcagacc 19740337  T
Q  124 attttttgcaatttgttcattatgcaggcggtttg 158  Q
    |||| || |||||| || |||||| ||| ||||||    
T  19740338 atttcttacaatttattaattatgtaggtggtttg 19740372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 12697729 - 12697613
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| || ||||| |||||| || | ||||||||||| ||||||||||| | |||   ||| || || || ||| |||||||| || | ||||||    
T  12697729 ttttggtgcattatggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctccgatcactttgtgcaatttattgaatatgca 12697630  T
Q  150 ggcggtttggaatcgcg 166  Q
    || |||||| |||||||    
T  12697629 ggtggtttgaaatcgcg 12697613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 37434048 - 37433932
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| |||||||| |||||| || | |||||| |||| ||||||||||| | ||| | ||| ||||| |||||| |||||||| || | |||||     
T  37434048 ttttggtgcattgtggcctttggtgcgggcttggctttgtgtcgaaggggtcgattctcatgctatctcagatcattttgtgcaatttattgaatatgcg 37433949  T
Q  150 ggcggtttggaatcgcg 166  Q
    || |||||| |||||||    
T  37433948 ggtggtttgaaatcgcg 37433932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 2170282 - 2170155
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||| ||||| |||||| |||   ||||||||| ||||||||  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |    
T  2170282 aatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatc 2170183  T
Q  124 attttttgcaatttgttcattatgcagg 151  Q
    ||||| |||||||| || | ||||||||    
T  2170182 attttgtgcaatttattgaatatgcagg 2170155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 5181612 - 5181533
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcga 103  Q
    |||||| ||||| ||||||  ||  |||||||||| |||||||||||||||| | ||||||| ||||| | |||||||||    
T  5181612 aatcatatgtttttgtcttgcccaacttttggtgccttgtggccattggtgtaggcatggctcggtgtggtaggggtcga 5181533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 17699398 - 17699297
Alignment:
Q  50 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 149  Q
    ||||||||| ||||| || |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  17699398 ttttggtgcattgtgacctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 17699299  T
Q  150 gg 151  Q
    ||    
T  17699298 gg 17699297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 18530457 - 18530310
Alignment:
Q  19 acatcaatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttc 118  Q
    |||| |||||| ||||| |||||| |||   ||||||||| ||||||||  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||    
T  18530457 acatgaatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatatc 18530358  T
Q  119 agaccattttttgcaatttgttcattatgcaggcggtttggaatcgcg 166  Q
    ||| |||||| |||||||| || | |||||||| || ||| |||||||    
T  18530357 agatcattttgtgcaatttattgaatatgcaggtggcttgaaatcgcg 18530310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 37254700 - 37254561
Alignment:
Q  24 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 123  Q
    |||||| ||||| |||||| |||   ||| ||||| ||||||||  ||||| || ||||||||||||| ||||||||  | | ||| | ||| ||||| |    
T  37254700 aatcatatgtttttgtcttgtccaattttcggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtaaattctcatgctatctcagatc 37254601  T
Q  124 attttttgcaatttgttcattatgcaggcggtttggaatc 163  Q
    ||||| |||||||| || | |||||||| || ||||||||    
T  37254600 attttgtgcaatttattgaatatgcaggtggcttggaatc 37254561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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