View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_227 (Length: 209)
Name: NF9661A_low_227
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_227 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 2803404 - 2803220
Alignment:
| Q |
24 |
tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagt |
123 |
Q |
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| T |
2803404 |
tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagt |
2803305 |
T |
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| Q |
124 |
ctcacattatttaaagaagtggaggttgaaaattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaag |
208 |
Q |
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| T |
2803304 |
ctcacattgtttaaagaagtggaggttgaacattctataaaagagatgacccataaacttaatgtcttaacgttttgggtaaaag |
2803220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 33561573 - 33561508
Alignment:
| Q |
140 |
aagtggaggttgaaaattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaa |
205 |
Q |
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| T |
33561573 |
aagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggttttgggtaa |
33561508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 13766795 - 13766882
Alignment:
| Q |
115 |
gttaaaagtctcacattatttaaagaagtggaggttgaaaattctataaaa--gagatgacccataaactcaatgtcttaacgttttg |
200 |
Q |
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| T |
13766795 |
gttagaagtctaacattgtttagaaaagtggaggttgattattttataaaagtgagatgactaataaactcaatgacttaaggttttg |
13766882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 42480533 - 42480611
Alignment:
| Q |
115 |
gttaaaagtctcacattatttaaagaagtggaggttgaaaattctataaaagagatgacccataaactcaatgtcttaa |
193 |
Q |
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| T |
42480533 |
gttaaaagtctcatactatttgaaaaagtggaggttgaacaatatgtaagtgagatgatccataaactcgatgtcttaa |
42480611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 8481962 - 8482027
Alignment:
| Q |
140 |
aagtggaggttgaaaattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaa |
205 |
Q |
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| T |
8481962 |
aagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagattttgggtaa |
8482027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 1188710 - 1188642
Alignment:
| Q |
140 |
aagtggaggttgaaaattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaag |
208 |
Q |
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|||||||||||||| ||| ||||| |||| ||| |||||||||| || |||| |||||||||||||| |
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| T |
1188710 |
aagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggttttgggtaaaag |
1188642 |
T |
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