View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_228 (Length: 209)
Name: NF9661A_low_228
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_228 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 3455555 - 3455715
Alignment:
| Q |
16 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455555 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgctgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
3455654 |
T |
|
| Q |
116 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctact |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455655 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctact |
3455715 |
T |
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Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 46239102 - 46238942
Alignment:
| Q |
16 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239102 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
46239003 |
T |
|
| Q |
116 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctact |
176 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46239002 |
cagcctaatctcatggtcttgataaccccagctacaaacaagttgcctaataacacctact |
46238942 |
T |
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