View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_229 (Length: 209)

Name: NF9661A_low_229
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_229
NF9661A_low_229
[»] chr2 (3 HSPs)
chr2 (1-198)||(4111554-4111751)
chr2 (3-158)||(27556087-27556245)
chr2 (3-156)||(28579974-28580128)
[»] chr3 (2 HSPs)
chr3 (1-158)||(5699601-5699760)
chr3 (62-158)||(6075476-6075575)
[»] chr7 (2 HSPs)
chr7 (16-158)||(11898102-11898246)
chr7 (3-156)||(5712860-5713014)
[»] chr8 (2 HSPs)
chr8 (32-161)||(15663234-15663366)
chr8 (18-156)||(15551149-15551290)
[»] chr4 (3 HSPs)
chr4 (62-156)||(18448525-18448622)
chr4 (75-158)||(11476179-11476263)
chr4 (11-161)||(20880795-20880945)
[»] chr5 (1 HSPs)
chr5 (3-148)||(19079922-19080069)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 4111554 - 4111751
Alignment:
Q  1 attatctgatatatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgtttttgaaaatgatgacgtaacatcttgaacc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  4111554 attatctgatatatataagatattgtttgtattccgctgcgagattttataaatccgaattatgcatgtttttgaaaatgatgacgtaacatcttgaacc 4111653  T
Q  101 ttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttacagtgcaaagtgtaggcaagcagcaagatgactttcatcctc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||    
T  4111654 ttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaccgtgcaaggtgaaggcaaggagcaagatgactttcatcctc 4111751  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 27556245 - 27556087
Alignment:
Q  3 tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt--gaaaatgatgacgtaacatcttgaac 99  Q
    ||||||| |||| |||||| |||||| |||||||||||||| |||||| ||| | |||| ||||||||||||  |||||| ||||||| |||||||||||    
T  27556245 tatctgagatatttgagatgttgtttttattccgctgcgag-ttttatgaaaaccgaattatgcatgtttttgagaaaattatgacgtgacatcttgaac 27556147  T
Q  100 -cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 158  Q
     |||||||   |||  |||| ||||||| | ||||| || |||||| ||||| |||||||    
T  27556146 tcttttgattaaatgatttagttgcattaattattgcttctggggtacaagggtgttaca 27556087  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 28579974 - 28580128
Alignment:
Q  3 tatctgatatatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaacct 101  Q
    ||||||| |||| ||||||  ||||| |||| || ||||||||||   ||| |  ||| |||||||||||  ||||||||||||||| ||||||||||      
T  28579974 tatctgagatatttgagatgctgtttttatttcgttgcgagatttatgaaaaccaaattatgcatgttttaagaaaatgatgacgtatcatcttgaactc 28580073  T
Q  102 tttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgtta 156  Q
    ||| || ||| || |||||||||||| ||||||  || |||||||||||| |||||    
T  28580074 ttt-aattaaatgatttatttgcattaaatattacttttggggttcaagggtgtta 28580128  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 5699601 - 5699760
Alignment:
Q  1 attatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaa 98  Q
    |||||| || |||| |||||| |||||| ||||||||| | || |||||| |||||  ||| |||||||||||  ||||||||||  ||| |||||||||    
T  5699601 attatcggagatatttgagatgttgtttttattccgctacaagtttttatgaaatccaaattatgcatgttttgagaaaatgatggagtagcatcttgaa 5699700  T
Q  99 ccttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 158  Q
    | || |||||||| |||||||||||||| |||||||||||| ||||||||||||||||||    
T  5699701 cattatgaaataactgtttatttgcattaaatattgtttgtagggttcaaggatgttaca 5699760  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 6075575 - 6075476
Alignment:
Q  62 atgcatgtttttga--aaatgatgacgtaacatcttgaaccttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgttaca 158  Q
    ||||||||||||||  ||||||| |||||||||||||||   ||| || ||| || |||||||||||| |||||| |||||||||||||| | |||||||    
T  6075575 atgcatgtttttgagaaaatgataacgtaacatcttgaattcttttaattaaatgatttatttgcattaaatattttttgtggggttcaacggtgttaca 6075476  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 11898246 - 11898102
Alignment:
Q  16 tgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgtttttga-aaatgatgacgtaacatcttgaa-ccttttgaaataat 112  Q
    ||||||||||||| |||||||||||||| |||||| ||| ||||||  |||||||||||||    |||| ||||||||||||||| |||||| |||||||    
T  11898246 tgagatattgtttttattccgctgcgag-ttttatgaaaactgaattctgcatgtttttgagttttgataacgtaacatcttgaatcctttttaaataat 11898148  T
Q  113 tgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 158  Q
    |||||||| ||||| ||||||  ||||||||||||||| |||||||    
T  11898147 tgtttattagcattaaatatttcttgtggggttcaagggtgttaca 11898102  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 5712860 - 5713014
Alignment:
Q  3 tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac- 99  Q
    ||||||| |||| |||||| |||||| |||| |||| |||| |||||| ||| |||||| |||||||||||  |||||||| ||| ||||||||||||      
T  5712860 tatctgagatatttgagatgttgttt-tatttcgctacgag-ttttatgaaaactgaattatgcatgttttgagaaaatgaagacataacatcttgaatt 5712957  T
Q  100 cttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgtta 156  Q
    |||||||| |||||| |||||||||||| ||||||| ||||||||||||||| |||||    
T  5712958 cttttgaa-taattgatttatttgcattaaatattgcttgtggggttcaagggtgtta 5713014  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 15663234 - 15663366
Alignment:
Q  32 ttccgctgcgagattttataaat-ctgaatgatgcatgtttttga--aaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcattt 127  Q
    |||||||||||| |||||||||  |||||| ||||||||||||||  |||||||||||||||||||| ||| |||||||   ||   ||||||||||||     
T  15663234 ttccgctgcgag-ttttataaaaactgaattatgcatgtttttgagaaaatgatgacgtaacatcttaaactcttttgattaaacgatttatttgcatta 15663332  T
Q  128 aatattgtttgtggggttcaaggatgttacagtg 161  Q
    |||||||||||| |||||||||| ||||| ||||    
T  15663333 aatattgtttgtagggttcaagggtgttatagtg 15663366  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 15551149 - 15551290
Alignment:
Q  18 agatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac-cttttgaaataattg 114  Q
    ||||||||||| ||||||||| |||| |||||| ||| | | || |||||||||||  |||||||||||||||||||||||||| |||||||   |||      
T  15551149 agatattgtttttattccgctacgag-ttttatgaaaacaggattatgcatgttttgagaaaatgatgacgtaacatcttgaactcttttgattaaatga 15551247  T
Q  115 tttatttgcatttaatattgtttgt-ggggttcaaggatgtta 156  Q
    |||||||||||| ||||||| |||| ||||||||||| |||||    
T  15551248 tttatttgcattaaatattgcttgtgggggttcaagggtgtta 15551290  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 18448622 - 18448525
Alignment:
Q  62 atgcatgtttttga--aaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgtta 156  Q
    ||||||||||||||  ||||||||||||| |||||||||| |||||||   |||  |||||||||||| |||| || ||||||||||||||| |||||    
T  18448622 atgcatgtttttgagaaaatgatgacgtagcatcttgaactcttttgattaaatgatttatttgcattaaatactgcttgtggggttcaagggtgtta 18448525  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 11476263 - 11476179
Alignment:
Q  75 aaaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 158  Q
    ||||||||||||| ||||||||||| |||||||    ||  |||||||||||| |||||||||||||| |||||||| |||||||    
T  11476263 aaaatgatgacgtgacatcttgaactcttttgattagatgatttatttgcattaaatattgtttgtggagttcaagggtgttaca 11476179  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 20880945 - 20880795
Alignment:
Q  11 atatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgtttttgaaaatgatgacgtaacatcttgaac-cttttgaaat 109  Q
    |||| |||||| |||||| ||||||| ||| ||||||   ||| | |||| |||||||||||||| ||  |||||||||| |||||||  |||||||       
T  20880945 atatttgagatgttgtttttattccgatgcaagatttatgaaaaccgaattatgcatgtttttgagaaa-atgacgtaacgtcttgaattcttttgatta 20880847  T
Q  110 aattgtttatttgcatttaatattgtttgtggggttcaaggatgttacagtg 161  Q
    |||  ||||||||||||  |||||  ||||||||||||||| ||||||||||    
T  20880846 aatgatttatttgcattacatatttcttgtggggttcaagggtgttacagtg 20880795  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 19079922 - 19080069
Alignment:
Q  3 tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac- 99  Q
    ||||||| |||  |||||| ||| || |||||||||| ||| |||||| ||| |||||| || ||| ||||  ||||||||||| ||||||||||||||     
T  19079922 tatctgagatacttgagatgttgcttttattccgctgtgag-ttttatgaaaactgaattatacatattttaagaaaatgatgatgtaacatcttgaact 19080020  T
Q  100 cttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaa 148  Q
    |||||| | |||||| |  ||||||||| |||||| ||||||||||||||    
T  19080021 cttttg-attaattgatgaatttgcattaaatattatttgtggggttcaa 19080069  T

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