View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_23 (Length: 403)
Name: NF9661A_low_23
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 11227792 - 11227574
Alignment:
| Q |
7 |
ttggtgttgtggctgaacatttggaattaaggaagggccagactgattgttgttgctttgttggtgttgtggatgaacttcattttccgtattttcagac |
106 |
Q |
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| T |
11227792 |
ttggtgttatggctgaacatttggaattaaggaagggccagactgattgttgttgctttgttggtgttgtggatgaacttcattttccgtatttccagac |
11227693 |
T |
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| Q |
107 |
tgattgttgttacctcgtcgtaacctttctagcatatcttttcctgaagacttgcgttttgacttcatctcgaatcaaatatctgcacaatttgctaaaa |
206 |
Q |
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| T |
11227692 |
tgattgttgttacctcgtcgtaacctttctagcatatcttttcctgaagacttgcgttttgacttcatctcgaatcaaatatctgcacaatttgctaaaa |
11227593 |
T |
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| Q |
207 |
aatgctaaaacatggaatg |
225 |
Q |
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| T |
11227592 |
aatgctaaaacatggaatg |
11227574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 280 - 403
Target Start/End: Complemental strand, 11227519 - 11227396
Alignment:
| Q |
280 |
gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaattactct |
379 |
Q |
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| T |
11227519 |
gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaactactct |
11227420 |
T |
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| Q |
380 |
aacataaaattagcatcttcatca |
403 |
Q |
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| T |
11227419 |
aacatgaaattagcatcttcatca |
11227396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 10128340 - 10128243
Alignment:
| Q |
128 |
aacctttctagcatatcttttcctgaagacttgcgttttgacttcatctcgaatcaaatatctgcacaatttgctaaaaaatgctaaaacatggaatg |
225 |
Q |
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| T |
10128340 |
aacctttctaccatatcttttcctggagacttgcatttctacttcatcttaaatcaaatatctgcacaatttgctaaccaaagctaaaacgtggaatg |
10128243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 11227848 - 11227775
Alignment:
| Q |
11 |
tgttgtggctgaacatttggaattaaggaagggccagactgattgttgttgctttgttggtgttgtggatgaac |
84 |
Q |
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| T |
11227848 |
tgttgtggctgaataatgggaattaaggaagggccagactgattattgttgctttgttggtgttatggctgaac |
11227775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 10128187 - 10128093
Alignment:
| Q |
280 |
gtacaaagttcataaaccttaattgagttgaaaagaacaata--aactatgacttatagcttattagaaaagcacaaaatgttcatataattaaa |
372 |
Q |
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| T |
10128187 |
gtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacataatgttcatataattaaa |
10128093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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