View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_234 (Length: 207)
Name: NF9661A_low_234
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_234 |
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| [»] scaffold1920 (1 HSPs) |
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Alignment Details
Target: scaffold1920 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: scaffold1920
Description:
Target: scaffold1920; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 437 - 259
Alignment:
| Q |
14 |
tggacatcagtataatttgaaaaagtttagtttctaaatttaataagatgtgtcagtaataggtcggacaaacaaaagtctcaaacaccaacatatacct |
113 |
Q |
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| T |
437 |
tggacatcagtataatttgaaaaaatttagtttctaaatttaataagatgtgtcggtaataggtcggataaacaaaagtctcaaacaccaacatatacct |
338 |
T |
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| Q |
114 |
ttgataaaaaatgttgacaccgataataatttaaaagactatttctattaacatttgtcaataacgtgttgaacaccaa |
192 |
Q |
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| T |
337 |
ttgataaaaaaagttgacaccgataatcatttaaaagactatttctaataacatttgtcaataatgtgttgaacaccaa |
259 |
T |
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Target: chr8 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 15359967 - 15360145
Alignment:
| Q |
14 |
tggacatcagtataatttgaaaaagtttagtttctaaatttaataagatgtgtcagtaataggtcggacaaacaaaagtctcaaacaccaacatatacct |
113 |
Q |
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| T |
15359967 |
tggacatcggtataatttgaaaaaatttagtttctaaatttaataagatgtgtcggtaataggtcggacaaacacaagtctcaaacaccaacatatacct |
15360066 |
T |
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| Q |
114 |
ttgataaaaaatgttgacaccgataataatttaaaagactatttctattaacatttgtcaataacgtgttgaacaccaa |
192 |
Q |
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| T |
15360067 |
ttgataaaaaaaattaacaccgataataatttaaaagactatttctaataacatgtgtcaataatgtgttgaacaccaa |
15360145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 15358889 - 15358946
Alignment:
| Q |
135 |
gataataatttaaaagactatttctattaacatttgtcaataacgtgttgaacaccaa |
192 |
Q |
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| T |
15358889 |
gataataatttaaaagactgtttgtaataacaagtgtcaataatctgttgaacaccaa |
15358946 |
T |
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