View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_238 (Length: 206)

Name: NF9661A_low_238
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_238
NF9661A_low_238
[»] chr2 (18 HSPs)
chr2 (20-186)||(44624832-44624998)
chr2 (20-166)||(44615459-44615605)
chr2 (25-153)||(39472763-39472891)
chr2 (22-177)||(39153111-39153266)
chr2 (22-177)||(39387469-39387624)
chr2 (22-153)||(39138698-39138826)
chr2 (22-177)||(39216709-39216864)
chr2 (20-150)||(39371167-39371297)
chr2 (22-177)||(39396627-39396782)
chr2 (23-152)||(39205742-39205871)
chr2 (17-177)||(39196485-39196645)
chr2 (22-177)||(39413004-39413159)
chr2 (23-145)||(44895114-44895236)
chr2 (22-150)||(39380496-39380624)
chr2 (26-152)||(39478294-39478420)
chr2 (22-177)||(39421161-39421313)
chr2 (23-152)||(39223764-39223893)
chr2 (49-168)||(39188738-39188857)
[»] chr8 (3 HSPs)
chr8 (20-153)||(44730165-44730298)
chr8 (20-178)||(44949869-44950027)
chr8 (22-175)||(45343017-45343170)
[»] chr5 (2 HSPs)
chr5 (22-178)||(17060698-17060854)
chr5 (17-177)||(33562336-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (20-178)||(5849-6007)
[»] chr7 (1 HSPs)
chr7 (26-153)||(19808959-19809083)
[»] chr6 (1 HSPs)
chr6 (23-80)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 44624832 - 44624998
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44624832 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgattta 44624931  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctggatacaag 186  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  44624932 tggattgcatacttattttgatgaagatgaagtctaaaagctttttggatctgttgctggatacaag 44624998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 44615459 - 44615605
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  44615459 atgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgattta 44615558  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttg 166  Q
     ||||||  || ||| |||||||||||||||||| | ||| ||||||    
T  44615559 cggattggttaattactttgatgaagatgaagtcttcaagatttttg 44615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 39472891 - 39472763
Alignment:
Q  25 gcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggat 124  Q
    ||||||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||||  ||||| || |||||| || ||||||| ||||||| ||    
T  39472891 gcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaat 39472792  T
Q  125 tgcatacttattttgatgaagatgaagtc 153  Q
    ||| ||||| |||||||||||||||||||    
T  39472791 tgcttacttcttttgatgaagatgaagtc 39472763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 39153111 - 39153266
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||||||||| || || | ||| ||||||||||| || ||||||||||||||||||||||||| |||||| || |||||| || |||||||||||||||    
T  39153111 gaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatg 39153210  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |||||  ||||| ||| ||| ||||||||||| |  ||||||||| || |||||||    
T  39153211 gattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgct 39153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 39387624 - 39387469
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  ||||| || |||||  || ||||||| |||||||    
T  39387624 gaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatg 39387525  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |  ||| |  ||||||||| |||||||||||  |  ||||||||| || |||||||    
T  39387524 ggctgcttgattattttgacgaagatgaagttttggagctttttgcatttgttgct 39387469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 39138698 - 39138826
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||||||||||||||| | | |  |||||||||||||||||   ||||||||||||||| ||| ||||||||| |||||| ||||||||||  ||||||    
T  39138698 gaagcattgaagctagcacttaatctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatg 39138794  T
Q  122 gattgcatacttattttgatgaagatgaagtc 153  Q
     ||||| |||||||||||||||||||||||||    
T  39138795 aattgcttacttattttgatgaagatgaagtc 39138826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 39216709 - 39216864
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||||||||||||||   ||| |||||| |||||||||  ||||||||| |||||||||||| ||||||||| |||||  || ||||||| |||||||    
T  39216709 gaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatg 39216808  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |||||  ||||| ||||| ||||||||||||  |  ||||||||| ||||||||||    
T  39216809 gattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgct 39216864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 39371167 - 39371297
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||||||||||||||| | |||  ||||||| |||||||||||||||| | ||||| |||||| |||||| || ||||||||| ||||||| | |||    
T  39371167 atgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaatta 39371266  T
Q  120 tggattgcatacttattttgatgaagatgaa 150  Q
    |||||||  ||||| ||||||||||||||||    
T  39371267 tggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 39396782 - 39396627
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||| |||||||||| | ||| |||| |||| |||| | ||||||||||||||||||||||| |||||| || ||| | ||| ||||||| |||||||    
T  39396782 gaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatg 39396683  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |||||| ||||| ||| ||||||||||||||  |  ||||||||| ||| ||||||    
T  39396682 gattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgct 39396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 39205871 - 39205742
Alignment:
Q  23 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 122  Q
    ||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||| ||| |||||| || |||||| || ||||||||||||||      
T  39205871 aagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataa 39205772  T
Q  123 attgcatacttattttgatgaagatgaagt 152  Q
    ||||| |  || ||||||| ||||||||||    
T  39205771 attgcttgattcttttgataaagatgaagt 39205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 39196645 - 39196485
Alignment:
Q  17 gaaatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||| |||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||||| |||||| || |||||  || ||||||| ||    
T  39196645 gaaaagaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaat 39196546  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    ||||  ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  39196545 ttataaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 39196485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 39413159 - 39413004
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||||||||||||||| | ||| |||||||||||| ||||||||||||| ||||| ||||||| ||||||  | ||||| ||| |||||||  ||| ||    
T  39413159 gaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttgtg 39413060  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |||||  ||||| ||| |||||||||||| || |  ||||||||| || |||||||    
T  39413059 gattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgct 39413004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 44895236 - 44895114
Alignment:
Q  23 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 122  Q
    |||||||||||||||| | | | || ||||||||||| |||| |||||||||||||||||||| |||||| || |||||| || ||||||| ||||||||    
T  44895236 aagcattgaagctagcacataaattcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatgg 44895137  T
Q  123 attgcatacttattttgatgaag 145  Q
    ||||  ||||| ||| |||||||    
T  44895136 attgattacttctttcgatgaag 44895114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 39380624 - 39380496
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||| ||| |||||| | ||| ||||||||| |||| | ||| ||||||||| ||||| ||| |||||| ||||||||| || ||||||| |||||||    
T  39380624 gaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaatttatg 39380525  T
Q  122 gattgcatacttattttgatgaagatgaa 150  Q
    |||||| ||||| ||| ||||||||||||    
T  39380524 gattgcttacttctttcgatgaagatgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 39478420 - 39478294
Alignment:
Q  26 cattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggatt 125  Q
    ||||||||||||| | ||| ||||||||| |||| | |||||||||||||||||||| ||  ||||| |  |||||| || ||||||| |||||||||||    
T  39478420 cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt 39478321  T
Q  126 gcatacttattttgatgaagatgaagt 152  Q
    || ||||| ||| || |||| ||||||    
T  39478320 gcttacttctttcgaagaaggtgaagt 39478294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 39421313 - 39421161
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||||||||||| || | ||| ||||||||||| ||| |||||||||||||||||  |||   ||||||||| |||||| || ||||||| |||||      
T  39421313 gaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaatactgaaaataattt---ggttctcggttttctactgcttttgtcaatttacc 39421217  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
     ||||  |||||||||  |||||||||||||  |  ||||||||| || |||||||    
T  39421216 aattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgct 39421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 39223764 - 39223893
Alignment:
Q  23 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 122  Q
    ||||||||||||||||   ||| || ||||  ||||||||||| ||||||||||| ||||||| |||||| || |||||  || ||||||| ||||||      
T  39223764 aagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataa 39223863  T
Q  123 attgcatacttattttgatgaagatgaagt 152  Q
    ||||| |  ||  |||||||||||||||||    
T  39223864 attgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 39188857 - 39188738
Alignment:
Q  49 aaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatg 148  Q
    |||||||||||||||||||||| || ||||||||||| |||||| || |||||| |  || | || |||||||| |||  | ||| |||  |||||||||    
T  39188857 aaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatg 39188758  T
Q  149 aagtcataaagctttttgga 168  Q
    | ||  ||||||||||||||    
T  39188757 atgttttaaagctttttgga 39188738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 44730165 - 44730298
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  44730165 atgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgattta 44730264  T
Q  120 tggattgcatacttattttgatgaagatgaagtc 153  Q
    | |||||| |||||| ||||||| ||||||||||    
T  44730265 tagattgcttacttactttgatggagatgaagtc 44730298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 44950027 - 44949869
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  |||||||    
T  44950027 atgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgattta 44949928  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 178  Q
    |||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  44949927 tggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 44949869  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 45343017 - 45343170
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    |||||||| |||||||| | |||||||||||||||| |||||| |||||||||||| || ||| | ||||| || |||||| |||||||||| ||| |||    
T  45343017 gaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaattcatg 45343116  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttg 175  Q
     ||||| ||||| ||||||| ||||||||||| |  ||||||||| ||||||||    
T  45343117 tattgcttacttcttttgataaagatgaagtcttggagctttttgtatctgttg 45343170  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 17060698 - 17060854
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||| ||||||||||| | |||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| ||||| |||||| ||||||    
T  17060698 gaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatg 17060797  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 178  Q
    |||||  ||||||||||||| ||||||||||| |  | ||||||| |||||||||||    
T  17060798 gattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgctg 17060854  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 33562336 - 33562496
Alignment:
Q  17 gaaatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||| |||||||||||||||||   ||| ||||||||||||||||||||||||||||||  || ||||| |||||| || |||||  || ||||||| ||    
T  33562336 gaaaagaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaat 33562435  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    ||||  ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  33562436 ttataaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 33562496  T

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Target: scaffold0283 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 6007 - 5849
Alignment:
Q  20 atgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  |||||||    
T  6007 atgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgattta 5908  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 178  Q
    |||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  5907 tggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 5849  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 19808959 - 19809083
Alignment:
Q  26 cattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggatt 125  Q
    ||||||||||||| | ||| ||||||||||||||||||   | ||||||||||||| ||| |||||| || |||||| || |||||||  |||||| |||    
T  19808959 cattgaagctagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaatt 19809055  T
Q  126 gcatacttattttgatgaagatgaagtc 153  Q
    || |||||||||||||||||||||||||    
T  19809056 gcttacttattttgatgaagatgaagtc 19809083  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 16114420 - 16114477
Alignment:
Q  23 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattc 80  Q
    ||||||||||||||||||| || ||||||||| |||||| ||| |||||| |||||||    
T  16114420 aagcattgaagctagcgcgcgatttgaaagcttacatgagagagaatactaaaaattc 16114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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