View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_239 (Length: 206)
Name: NF9661A_low_239
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_239 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 45853444 - 45853255
Alignment:
| Q |
3 |
aacaatgagatggacatcaagcgctccgagccaacattggagctttcctacgttcataatcagcatcatcagtaggaaactcacagcgacaaacaggaca |
102 |
Q |
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| T |
45853444 |
aacaatgacatacacatcaagcgctccgggccaacattggagctttcctacgttcataatcagcatcatcagtaggaaactcacagcgacaaacaggaca |
45853345 |
T |
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| Q |
103 |
agtattcctaatccccaaccaaggcattatgcaatcaccatgatatcgatgagaacacggtaacaacttcacctcttctacaacaccaaa |
192 |
Q |
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| T |
45853344 |
agtattcctaatccccaaccaaggcattatgcaatcaccatgatatcgatgagaacacggcaacaacttcacctcttctacaacagcaaa |
45853255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 6041997 - 6041912
Alignment:
| Q |
59 |
taatcagcatcatcagtaggaaactcacagcgacaaacaggacaagtattcctaatccccaaccaaggcattatgcaatcaccatg |
144 |
Q |
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| T |
6041997 |
taatcatcatcatccgttggtaactcataccgacaaacaggacaagtattccgaatattcaaccacggcaaaatacaatcaccatg |
6041912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 29164952 - 29164904
Alignment:
| Q |
56 |
tcataatcagcatcatcagtaggaaactcacagcgacaaacaggacaag |
104 |
Q |
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| T |
29164952 |
tcataatcaggatcatctgtaggcaactcaaaacgacaaacaggacaag |
29164904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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