View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_24 (Length: 402)
Name: NF9661A_low_24
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 11204768 - 11205008
Alignment:
| Q |
28 |
ataataatatcaatcattgttatctgtttcacattatggtccatcatctttggatttggaactgtttttgaaccagaagttcaattatggattacatgtt |
127 |
Q |
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| T |
11204768 |
ataataatatcaatcattgttatctgtttcacattatggtccatcatctttggatttggaactgtttttgaaccagaagttcaattatggattacatgtt |
11204867 |
T |
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| Q |
128 |
ttggagttatgatacttctcaatatcttatactttttggctcaatggattagagacaattgtatgtctaaaagaaggaatacgaaaccctctaccaaagt |
227 |
Q |
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| T |
11204868 |
ttggagttatgatacttctcagtatcttataccttttggctccctggattcgagacaattgtatgtgtaaaagaaggaatacgaaaccctctaccaaagt |
11204967 |
T |
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| Q |
228 |
ggagctgaccgaagttaaggtttcttcatcaaaagaataat |
268 |
Q |
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| T |
11204968 |
ggagctgaccgaagttaaggtttcttcatcaaaagaataat |
11205008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 263 - 389
Target Start/End: Original strand, 11205086 - 11205219
Alignment:
| Q |
263 |
aataatagtgtcctttttaacgacacagttttctttcatgcatggtttt-------tgttttattttctcatgtaacgagagtgtcctttttaaggacaa |
355 |
Q |
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| T |
11205086 |
aataatagtgtcctttttaaggatatagttttctttcatgcatggtttttgttttttgttttattttctcatgtaacgagagtgtcctttttaagaacaa |
11205185 |
T |
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| Q |
356 |
aactagaattgtgtttctctccattttctgatgt |
389 |
Q |
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| T |
11205186 |
aactagaattgtgtttctatccattttcttatgt |
11205219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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