View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_244 (Length: 204)

Name: NF9661A_low_244
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_244
NF9661A_low_244
[»] chr5 (15 HSPs)
chr5 (17-200)||(26072536-26072719)
chr5 (22-197)||(27166268-27166444)
chr5 (22-200)||(17106576-17106754)
chr5 (22-142)||(18090134-18090254)
chr5 (22-197)||(32228452-32228628)
chr5 (22-88)||(33169306-33169372)
chr5 (24-92)||(18148160-18148228)
chr5 (22-142)||(18359462-18359582)
chr5 (23-83)||(24407602-24407662)
chr5 (24-69)||(8300627-8300672)
chr5 (27-72)||(27766696-27766741)
chr5 (24-72)||(10774101-10774149)
chr5 (22-92)||(42927779-42927849)
chr5 (31-72)||(33385816-33385857)
chr5 (22-90)||(8941832-8941900)
[»] chr2 (18 HSPs)
chr2 (24-180)||(15391793-15391950)
chr2 (17-142)||(15917296-15917421)
chr2 (22-151)||(42563113-42563243)
chr2 (22-72)||(12645184-12645234)
chr2 (22-72)||(40176318-40176368)
chr2 (22-72)||(44473006-44473056)
chr2 (23-88)||(28252370-28252435)
chr2 (22-70)||(3400632-3400680)
chr2 (24-72)||(33516226-33516274)
chr2 (22-85)||(44023010-44023073)
chr2 (30-70)||(13059580-13059620)
chr2 (22-142)||(38604745-38604865)
chr2 (22-88)||(17765388-17765454)
chr2 (24-69)||(11000395-11000440)
chr2 (24-69)||(14439403-14439448)
chr2 (28-64)||(16241529-16241565)
chr2 (28-64)||(17569007-17569043)
chr2 (30-70)||(36930841-36930881)
[»] chr3 (17 HSPs)
chr3 (17-200)||(17098189-17098373)
chr3 (22-186)||(16178596-16178761)
chr3 (22-200)||(15312230-15312410)
chr3 (22-72)||(50651790-50651840)
chr3 (22-88)||(963589-963655)
chr3 (22-72)||(11310641-11310691)
chr3 (24-72)||(11203469-11203517)
chr3 (22-72)||(19890326-19890376)
chr3 (22-72)||(48570481-48570531)
chr3 (24-69)||(7031462-7031507)
chr3 (27-72)||(29524187-29524232)
chr3 (22-90)||(3140500-3140568)
chr3 (24-72)||(33496197-33496245)
chr3 (27-81)||(12342660-12342714)
chr3 (30-72)||(30695785-30695827)
chr3 (30-72)||(36801517-36801559)
chr3 (26-72)||(53184979-53185025)
[»] scaffold0161 (1 HSPs)
scaffold0161 (22-200)||(6322-6501)
[»] chr4 (15 HSPs)
chr4 (22-164)||(48242027-48242169)
chr4 (22-142)||(19740412-19740532)
chr4 (22-198)||(5790407-5790580)
chr4 (22-72)||(55726035-55726085)
chr4 (22-72)||(5148309-5148359)
chr4 (22-142)||(17402058-17402178)
chr4 (22-81)||(11587631-11587690)
chr4 (27-142)||(20002371-20002486)
chr4 (22-72)||(36223531-36223581)
chr4 (22-72)||(54483601-54483651)
chr4 (27-72)||(12697466-12697511)
chr4 (22-142)||(46145323-46145443)
chr4 (22-85)||(2822466-2822529)
chr4 (24-72)||(8360750-8360798)
chr4 (28-64)||(14137328-14137364)
[»] chr7 (4 HSPs)
chr7 (17-87)||(48394547-48394617)
chr7 (22-91)||(37254406-37254475)
chr7 (22-72)||(25619107-25619157)
chr7 (24-69)||(18530160-18530205)
[»] chr8 (15 HSPs)
chr8 (24-197)||(12257763-12257941)
chr8 (24-197)||(12265155-12265333)
chr8 (22-72)||(2529534-2529584)
chr8 (22-85)||(25090035-25090098)
chr8 (22-72)||(13199771-13199821)
chr8 (22-76)||(34137401-34137455)
chr8 (24-69)||(2169990-2170035)
chr8 (24-69)||(20823946-20823991)
chr8 (30-70)||(136574-136614)
chr8 (30-70)||(18309362-18309402)
chr8 (30-72)||(37433788-37433830)
chr8 (24-69)||(43270100-43270145)
chr8 (22-90)||(5181317-5181385)
chr8 (32-72)||(17699140-17699180)
chr8 (30-70)||(25890718-25890758)
[»] chr6 (14 HSPs)
chr6 (22-197)||(18682821-18682998)
chr6 (24-174)||(17330621-17330763)
chr6 (23-109)||(12429037-12429123)
chr6 (22-72)||(13937348-13937398)
chr6 (22-72)||(20883472-20883522)
chr6 (22-72)||(11462063-11462113)
chr6 (22-76)||(14373429-14373483)
chr6 (27-72)||(10929746-10929791)
chr6 (27-72)||(17606776-17606821)
chr6 (22-81)||(15959247-15959306)
chr6 (30-72)||(215059-215101)
chr6 (22-92)||(24767846-24767916)
chr6 (22-88)||(32536543-32536609)
chr6 (22-72)||(33185084-33185134)
[»] chr1 (12 HSPs)
chr1 (22-72)||(4646500-4646550)
chr1 (22-142)||(6478167-6478292)
chr1 (24-72)||(28351376-28351424)
chr1 (22-72)||(2490860-2490910)
chr1 (22-72)||(37192369-37192419)
chr1 (22-88)||(47623491-47623557)
chr1 (24-69)||(16918254-16918299)
chr1 (24-73)||(23635163-23635212)
chr1 (22-66)||(37297947-37297991)
chr1 (24-73)||(23713832-23713881)
chr1 (31-72)||(43388024-43388065)
chr1 (30-70)||(30713323-30713363)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 26072536 - 26072719
Alignment:
Q  17 gacatcattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttc 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||  ||||| ||||||||||  || ||||||||    
T  26072536 gacaacattactagctttcaaccaccacaaggaataagattttactttatctaacattttcggtagggaattttgtttgttcctgaatgacttgtcgttc 26072635  T
Q  117 cgatcattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaa 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26072636 cgatcattcgacaaaatccaaacacacaggagccatataaggtgaaaaaacg-atgccgcgatttcaaaccgcctgcataatgaa 26072719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 27166444 - 27166268
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||| ||||||||||  |||||| || |||||||  ||  | ||    
T  27166444 cattactagctttcaaccaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgttggttcctaaataacctgttattttgttc 27166345  T
Q  122 attcgacaaaatccaaacac-aaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataat 197  Q
    |||| |||| | |||||||| |||||||||||| ||||||||||| ||  | |||||||| | ||| ||||||||||    
T  27166344 attccacaatacccaaacacaaaggagccatatcaggtgaaaaaatgatcgtcgcgattttataccacctgcataat 27166268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 17106754 - 17106576
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    |||||||| ||||||||||||||||  |||| ||||| ||||||||||||| ||| |||||||| |||||| | || || || |||||||| || ||||     
T  17106754 cattactatctttcaaccaccacaacaaataggatttaactttatctaacagttgtggtagagaactttgtttatttctaaataacctgtcattgcgatt 17106655  T
Q  122 attcgacaaaatccaaacacaaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaa 200  Q
    |||| | | |||||||||||||||||| | |||||||||||||| ||   |||||||| |||||| || ||||||||||    
T  17106654 attccaaataatccaaacacaaggagctaaataaggtgaaaaaatgatctccgcgattgcaaaccaccagcataatgaa 17106576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 18090254 - 18090134
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    |||||| ||| |||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||| || || |||||||| ||| |||||||| ||||    
T  18090254 cattaccagccttcaaccaccacaatgaataggattttactttatctaacatatgcggtaaagagctatgagtattcctgaataacttgtcgttctgatc 18090155  T
Q  122 attcgacaaaatccaaacaca 142  Q
     ||| |||||| |||||||||    
T  18090154 tttccacaaaacccaaacaca 18090134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 32228452 - 32228628
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    |||||||||||||||||||||||||  |||| |||||||||||||||||||| |||||||||||||||||| | || ||||| |   | || ||||| ||    
T  32228452 cattactagctttcaaccaccacaaaaaatatgattttactttatctaacatatgcggtagagagctttgtttatttctgaaaactttatcattccgctc 32228551  T
Q  122 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataat 197  Q
    | || |||||||||||||||| |||||||| || || || ||||| ||| | |||| | ||||||  ||||||||||    
T  32228552 agtccacaaaatccaaacacacaggagccaaattagatggaaaaaggaacgtcgcgctctcaaacaacctgcataat 32228628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 33169306 - 33169372
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 88  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||||  ||||||| ||||||    
T  33169306 cattactagctttcatccaccacaaggaacatgattttactttatctaacaaatgcggtaaagagct 33169372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 18148228 - 18148160
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgt 92  Q
    ||||||||||||||||||||||| || || |||||||||||||||||||| || || | ||||||||||    
T  18148228 ttactagctttcaaccaccacaaagagtatgattttactttatctaacatatgtggaatagagctttgt 18148160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 18359582 - 18359462
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    ||||||||||||||||||||||||| | ||  ||||||||||||||||||| | | |||| ||| |||||   |||||  || |||||||| ||||| ||    
T  18359582 cattactagctttcaaccaccacaaagtatgtgattttactttatctaacaatagtggtatagaactttgacggttccgaaataacctgtcattccgttc 18359483  T
Q  122 attcgacaaaatccaaacaca 142  Q
    |||| | |||| |||||||||    
T  18359482 attccataaaacccaaacaca 18359462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 24407602 - 24407662
Alignment:
Q  23 attactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtaga 83  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||||||  |||||||||    
T  24407602 attactagctctcatccactacaaggaataagattttactttatctaacaaatgcggtaga 24407662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 8300672 - 8300627
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatcta 69  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  8300672 ttactagctttcaaccaccacaaggtatttgattttactttatcta 8300627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 27766696 - 27766741
Alignment:
Q  27 ctagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  27766696 ctagctttcaaccaccacaaggtattcgattttactttatctaaca 27766741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 10774101 - 10774149
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||| ||||||||||||||||||| ||  |||||||||||||||||||    
T  10774101 ttactggctttcaaccaccacaaggtatttgattttactttatctaaca 10774149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 42927779 - 42927849
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgt 92  Q
    |||||| |||||| ||||||||||| ||| | ||||| |||||||||| |||||| || | ||||||||||    
T  42927779 cattacgagcttttaaccaccacaaagaagatgatttaactttatctagcatttgtggcaaagagctttgt 42927849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 33385857 - 33385816
Alignment:
Q  31 ctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  33385857 ctttcaaccaccacaaggtatttgattttactttatctaaca 33385816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 8941900 - 8941832
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagcttt 90  Q
    ||||||||||||||| ||||||||||| | | ||||||| ||||| ||| |  ||||||| ||||||||    
T  8941900 cattactagctttcagccaccacaaggtacatgattttaatttatgtaataaatgcggtaaagagcttt 8941832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 15391793 - 15391950
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcat 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  15391793 ttactagctttcaaccaccacaaggaataagatttaactttatctaacaattgcggtagagagctttgtttgttcctaaacaacctgtcgttccgatcat 15391892  T
Q  124 tcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgattt 180  Q
    || |||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  15391893 tccacaaaacccaaacacacaggagccatataaggtgaaaaaacgaacgccccgattt 15391950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 15917296 - 15917421
Alignment:
Q  17 gacatcattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttc 116  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||| |||||||||| | ||||| || |  ||||| |||    
T  15917296 gacaacattactagctttcaaccaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgtctattcctaaatagtctgtcattc 15917395  T
Q  117 cgatcattcgacaaaatccaaacaca 142  Q
    || |||||| |||||| |||||||||    
T  15917396 cgttcattccacaaaacccaaacaca 15917421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 42563113 - 42563243
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| | |||||| ||||| | |||||||| |  || || ||||  ||    
T  42563113 cattactagctttcaaccaccacaaggaatatgattttactttatttaacatatgcagaagagagttttgtttattcctgaaaactctatcattcctctc 42563212  T
Q  122 attcgacaaaatccaaacaca-aggagccat 151  Q
    |||| |||||| ||||| ||| |||||||||    
T  42563213 attccacaaaacccaaatacagaggagccat 42563243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 12645184 - 12645234
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  12645184 cattactagcttttaaccaccacaaggtatgagattttactttatctaaca 12645234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 40176318 - 40176368
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  40176318 cattactagctttcaaccaccacatggaatttgattttactttatctaaca 40176368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 44473006 - 44473056
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  44473006 cattattagctttcaaccaccacaaagaatatgattttactttatctaaca 44473056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 28252370 - 28252435
Alignment:
Q  23 attactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 88  Q
    |||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| |||| ||||||    
T  28252370 attactagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggtaaagagct 28252435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 3400632 - 3400680
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaa 70  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  3400632 cattaatagctttcaaccaccacaaggtatatgattttactttatctaa 3400680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 33516274 - 33516226
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||    
T  33516274 ttactagctttcaaccaccacatggaatttgattttactttatctaaca 33516226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 44023010 - 44023073
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagaga 85  Q
    |||||||||||||||||||||||| || ||  |||||||||||||||||||  || ||||||||    
T  44023010 cattactagctttcaaccaccacagggtatttgattttactttatctaacaactgtggtagaga 44023073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 13059580 - 13059620
Alignment:
Q  30 gctttcaaccaccacaaggaataagattttactttatctaa 70  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  13059580 gctttcaaccaccacaaggaataaaactttactttatctaa 13059620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 38604865 - 38604745
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    |||||||||||||||||||||||||  |  | ||||||||||| || ||||  || |||| ||||||||||   |||||||| | | |||| ||||| ||    
T  38604865 cattactagctttcaaccaccacaaaaagcatgattttactttttccaacaactgtggtatagagctttgttgattcctgaatagcgtgtcattccgttc 38604766  T
Q  122 attcgacaaaatccaaacaca 142  Q
    |||| |||||| ||| |||||    
T  38604765 attccacaaaacccacacaca 38604745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 17765454 - 17765388
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 88  Q
    ||||||||||||| |||| |||||| ||| | ||||||||||| ||||||| ||| |||| ||||||    
T  17765454 cattactagcttttaacccccacaaagaagatgattttactttgtctaacaattgtggtaaagagct 17765388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 11000440 - 11000395
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatcta 69  Q
    ||||||||||||||||||||||||| || | |||||| ||||||||    
T  11000440 ttactagctttcaaccaccacaaggtatgaaattttaatttatcta 11000395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 14439403 - 14439448
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatcta 69  Q
    |||||||||||||||||||||||||  |  ||||||||||||||||    
T  14439403 ttactagctttcaaccaccacaaggtttgtgattttactttatcta 14439448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 16241529 - 16241565
Alignment:
Q  28 tagctttcaaccaccacaaggaataagattttacttt 64  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  16241529 tagctttcagccaccacaaggaataagactttacttt 16241565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 17569043 - 17569007
Alignment:
Q  28 tagctttcaaccaccacaaggaataagattttacttt 64  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  17569043 tagctttcaaccaccacaaagaataatattttacttt 17569007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 36930841 - 36930881
Alignment:
Q  30 gctttcaaccaccacaaggaataagattttactttatctaa 70  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  36930841 gctttcaaccaccacaatgaatagtattttactttatctaa 36930881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 17098373 - 17098189
Alignment:
Q  17 gacatcattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttc 116  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||| | |||||||| |||||||| |||    
T  17098373 gacatctttactagatttcaaccaccacaaggaatatgattttacttcatctaacatatgcggtagagatctttgtttattcctgaataacctgtcattc 17098274  T
Q  117 cgatcattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaa 200  Q
    ||||||||| |||||| ||||||||| ||| |||||||||||| |||||||||   | | ||||||||||| ||||| |||||||    
T  17098273 cgatcattccacaaaacccaaacacataggggccatataaggtcaaaaaacgatatctgtgatttcaaaccacctgcgtaatgaa 17098189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 16178596 - 16178761
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    ||||||||||||||||||||||||| |||||  |||| ||||||| ||||||| | ||| ||||||||||| ||||||| || |||||||| ||||||||    
T  16178596 cattactagctttcaaccaccacaatgaatagaatttaactttatataacattagtggttgagagctttgtttgttcctaaataacctgtcattccgatc 16178695  T
Q  122 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaacc 186  Q
    |||| | | |||||||||||| |||||||| |||| ||||||||| ||   || ||||||||||||    
T  16178696 attccaaataatccaaacacataggagccaaataaagtgaaaaaatgatatccacgatttcaaacc 16178761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 15312230 - 15312410
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |  ||||| ||||||||  | ||||| || ||| || | ||||||||    
T  15312230 cattactagctttcaaccaccacaaggaatatgattttagtttatctaacatatatggtagtgagctttgcttattcctaaataacttg-cattccgatc 15312328  T
Q  122 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatg----ccgcgatttcaaaccgcctgcataatgaa 200  Q
    |||| |||||| ||||||||| ||||||| |||||||||||||||  ||||    ||||||||||||||| | |||||||||||    
T  15312329 attccacaaaacccaaacacataggagccttataaggtgaaaaaa--aatgatctccgcgatttcaaaccacatgcataatgaa 15312410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 50651840 - 50651790
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50651840 cattactagctttcaaccaccacaaggaataagattttactttacctaaca 50651790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 963655 - 963589
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 88  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||||  ||||||| ||||||    
T  963655 cattactagctttcatccaccacaaggaacatgattttactttatctaacaaatgcggtaaagagct 963589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 11310691 - 11310641
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  11310691 cattgctagctttcaaccaccacaaggtatgagattttactttatctaaca 11310641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 11203469 - 11203517
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  11203469 ttactagctttcaaccaccacaaggtatttgattttactttatctaaca 11203517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 19890326 - 19890376
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||||||||||||  |  |||||||||||||||||||    
T  19890326 cattactagctttcaaccaccacaaggtgtgtgattttactttatctaaca 19890376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 48570531 - 48570481
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||| |||||||||||||||||| |||||  |||||||||||||||||||    
T  48570531 cattattagctttcaaccaccacagggaatttgattttactttatctaaca 48570481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 7031507 - 7031462
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatcta 69  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  7031507 ttactagctttcaaccaccacaaggtatttgattttactttatcta 7031462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 29524232 - 29524187
Alignment:
Q  27 ctagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  29524232 ctagctttcaaccaccacaaggtatttgattttactttatctaaca 29524187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 3140500 - 3140568
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagcttt 90  Q
    |||||||||||||||  ||| ||||| || | |||||||||||||||||||  ||||||| ||||||||    
T  3140500 cattactagctttcagtcacgacaagaaacatgattttactttatctaacaaatgcggtaaagagcttt 3140568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 33496197 - 33496245
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||| |||||||||||||||||| ||  |||||||||||||||||||    
T  33496197 ttactaactttcaaccaccacaaggtatttgattttactttatctaaca 33496245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 12342714 - 12342660
Alignment:
Q  27 ctagctttcaaccaccacaaggaataagattttactttatctaacatttgcggta 81  Q
    ||||||||||||||| |||||| ||  ||||||||||||||||||| | ||||||    
T  12342714 ctagctttcaaccactacaaggtatttgattttactttatctaacaatagcggta 12342660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 30695827 - 30695785
Alignment:
Q  30 gctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  30695827 gctttcaaccaccacaaggtatttgattttactttatctaaca 30695785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 36801559 - 36801517
Alignment:
Q  30 gctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  36801559 gctttcaaccaccacaaggtatttgattttactttatctaaca 36801517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 53185025 - 53184979
Alignment:
Q  26 actagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||||    
T  53185025 actaactttcaaccaccacaaggtatgtgattttactttatctaaca 53184979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 6501 - 6322
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||  | |||||||| ||||||||||||||||     
T  6501 cattactagctttcaaccaccacaatgaataagattttactttatctaacatatgcggtaaagagctatggttattcctgaataacctgtcgttccgata 6402  T
Q  122 attcgacaaaatccaaacac-aaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaa 200  Q
     ||| |||||| |||||||| ||||| ||| || | |||||| |||||| |||||||||||| | | |||||||||||||    
T  6401 tttccacaaaacccaaacacaaaggacccaaatcaagtgaaagaacgaacgccgcgatttcagatcacctgcataatgaa 6322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 48242027 - 48242169
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    |||||||| |||||||||| ||||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||| | || ||| |||| ||||||||    
T  48242027 cattactaactttcaaccaacacaaggaatatgattttactttatctaacatatgtggt-gagagctttgtttgttcttaaataacatgtcattccgatc 48242125  T
Q  122 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaa 164  Q
    |||| | | |||||||||||| ||||||||||||||||||||||    
T  48242126 attccatataatccaaacacataggagccatataaggtgaaaaa 48242169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 19740532 - 19740412
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| | || ||||| |  || || ||||| ||    
T  19740532 cattactagctttcagccaccacaaggaatatgattttactttatctaacatatgcgatagagagctttgtttatttctgaaaactctatcattccgctc 19740433  T
Q  122 attcgacaaaatccaaacaca 142  Q
    |||| ||||||||||||||||    
T  19740432 attccacaaaatccaaacaca 19740412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 5790580 - 5790407
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    ||||||||||||||||||||||||| ||||| ||||| |||| |||||||| ||| |||||||| |||||| |||||||    ||| |||| ||||||||    
T  5790580 cattactagctttcaaccaccacaacgaataggatttaacttgatctaacagttgtggtagagaactttgtttgttcct----aacatgtcattccgatc 5790485  T
Q  122 attcgacaaaatccaaacac-aaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatg 198  Q
    |||| | | |||| |||||| |||||| || |||||||||||||| ||   |||||||| |||||| || ||||||||    
T  5790484 attccaaataatcaaaacacaaaggagtcaaataaggtgaaaaaatgatctccgcgattgcaaaccaccagcataatg 5790407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 55726085 - 55726035
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  55726085 cattactagctttcaaccaccacaaggtatgagattttactttatctaaca 55726035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 5148309 - 5148359
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  5148309 cattactagctttcaaccaccacaaggtatgtgattttactttatctaaca 5148359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 17402178 - 17402058
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    |||||||||| || ||| ||||||| ||| | |||||||||||||||||||| || |||| |||||||| | |||| || || | ||| || ||||| ||    
T  17402178 cattactagcctttaactaccacaaagaagatgattttactttatctaacatatgtggtaaagagctttttctgtttctaaatagcctatcattccgttc 17402079  T
Q  122 attcgacaaaatccaaacaca 142  Q
    |||| ||||||  ||||||||    
T  17402078 attccacaaaactcaaacaca 17402058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 11587690 - 11587631
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggta 81  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| ||||    
T  11587690 cattactagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggta 11587631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 20002371 - 20002486
Alignment:
Q  27 ctagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcg 126  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||| | | |||| ||| |||||   |||||  || |||||||| ||||| || |||     
T  20002371 ctagctttcaaccaccacaaggtatgtgattttactttatctaacaatagtggtatagaactttgacagttccgaaataacctgtcattccgttccttca 20002470  T
Q  127 acaaaatccaaacaca 142  Q
    | |||| |||||||||    
T  20002471 ataaaacccaaacaca 20002486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 36223581 - 36223531
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||| | | ||||||||||| |||||||||||||||||||    
T  36223581 cattactagctttcagctatcacaaggaatatgattttactttatctaaca 36223531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 54483651 - 54483601
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||| ||||||||||| ||  |||||||||||||||||||    
T  54483651 cattactagctttcagccaccacaaggtatttgattttactttatctaaca 54483601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 12697466 - 12697511
Alignment:
Q  27 ctagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  12697466 ctagctttcaaccaccacaaggtatttgattttactttatctaaca 12697511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 46145323 - 46145443
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 121  Q
    |||||||| |||||| ||| || |||||| | |||||||||||||||||||  ||||||| |||||| ||| | || | ||| |  || || ||||| ||    
T  46145323 cattactaactttcatccatcataaggaacatgattttactttatctaacaaatgcggtaaagagctgtgtttatttcagaaaactctatcattccgctc 46145422  T
Q  122 attcgacaaaatccaaacaca 142  Q
    |||| |||| |||||||||||    
T  46145423 attccacaatatccaaacaca 46145443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 2822529 - 2822466
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagaga 85  Q
    ||||||||||||||||||||||||  ||||  ||||| |||||||||||||  || ||||||||    
T  2822529 cattactagctttcaaccaccacagagaatttgatttcactttatctaacaactgtggtagaga 2822466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 8360750 - 8360798
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||| |||||||||||||| |||| ||  |||||||||||||||||||    
T  8360750 ttactggctttcaaccaccataaggtatttgattttactttatctaaca 8360798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 14137328 - 14137364
Alignment:
Q  28 tagctttcaaccaccacaaggaataagattttacttt 64  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  14137328 tagctttcaaccaccacaaagaataatattttacttt 14137364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 48394547 - 48394617
Alignment:
Q  17 gacatcattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagc 87  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||    
T  48394547 gacaacattactagctttcaaccaccacaaggaatatgattttattttatctaacatatgcggtagagagc 48394617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 37254406 - 37254475
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttg 91  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||||||| ||| |||| ||| |||||    
T  37254406 cattactagctttcaaccaccacaaggtatgtgattttactttatctaacaattgtggtatagaactttg 37254475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 25619107 - 25619157
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||||||| |||| ||  |||||||||||||||||||    
T  25619107 cattactagctttcaaccaccataaggtatgtgattttactttatctaaca 25619157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 18530160 - 18530205
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatcta 69  Q
    ||||||| ||||||||||||||||| ||  ||||||||||||||||    
T  18530160 ttactagttttcaaccaccacaaggtatgtgattttactttatcta 18530205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 12257941 - 12257763
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtc----gttccga 119  Q
    |||||||||||||||||||||| | |||| |||||||||||||||||||| |||| ||| ||||||||| | |||||||| |  || ||     |||||     
T  12257941 ttactagctttcaaccaccacatgtaatatgattttactttatctaacatatgcgatagtgagctttgtttattcctgaaaactctatcattaattccgc 12257842  T
Q  120 tcattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataat 197  Q
    |||||| |||| | ||||||||| | ||||||||||||||||||||||||  |  ||||| ||||||| |||| |||||    
T  12257841 tcattccacaacacccaaacacataagagccatataaggtgaaaaaacgagcgttgcgatctcaaaccacctgaataat 12257763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 12265333 - 12265155
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtc----gttccga 119  Q
    |||||||||||||||||||||| | |||| |||||||||||||||||||| |||| ||| ||||||||| | |||||||| |  || ||     |||||     
T  12265333 ttactagctttcaaccaccacatgtaatatgattttactttatctaacatatgcgatagtgagctttgtttattcctgaaaactctatcattaattccgc 12265234  T
Q  120 tcattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataat 197  Q
    |||||| |||| | ||||||||| | ||||||||||||||||||||||||  |  ||||| ||||||| |||| |||||    
T  12265233 tcattccacaacacccaaacacataagagccatataaggtgaaaaaacgagcgttgcgatctcaaaccacctgaataat 12265155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 2529534 - 2529584
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2529534 cattactagctttcaaccaccacaaggtatgagattttactttatctaaca 2529584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 25090035 - 25090098
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagaga 85  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||||  || ||||||||    
T  25090035 cattactagctttcagccaccacaaggaatttgattttactttatctaacaactgtggtagaga 25090098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 13199771 - 13199821
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  13199771 cattactagctttcgaccaccacaaggtatgagattttactttatctaaca 13199821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 34137455 - 34137401
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttg 76  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||| |||||||||||    
T  34137455 cattactagcttttaaccaccacaatgaagatgattttactttgtctaacatttg 34137401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 2169990 - 2170035
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatcta 69  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  2169990 ttactagctttcaaccaccacaaggtatgtgattttactttatcta 2170035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 20823946 - 20823991
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatcta 69  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  20823946 ttactagctttcaaccaccacaaggtatttgattttactttatcta 20823991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 136574 - 136614
Alignment:
Q  30 gctttcaaccaccacaaggaataagattttactttatctaa 70  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  136574 gctttcaaccaccacaaggaataaaactttactttatctaa 136614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 18309402 - 18309362
Alignment:
Q  30 gctttcaaccaccacaaggaataagattttactttatctaa 70  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  18309402 gctttcaaccaccacaaggaataaaactttactttatctaa 18309362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 37433788 - 37433830
Alignment:
Q  30 gctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  37433788 gctttcaaccaccacaaggtatttgattttactttatctaaca 37433830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 43270100 - 43270145
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatcta 69  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||    
T  43270100 ttactagctttcaaacaccacaaggtatgtgattttactttatcta 43270145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 5181317 - 5181385
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagcttt 90  Q
    |||||||| |||| |||||||||||  || | |||||||||||||||||||| || |||| ||| ||||    
T  5181317 cattactaacttttaaccaccacaaataagatgattttactttatctaacatatgtggtaaagaacttt 5181385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 17699140 - 17699180
Alignment:
Q  32 tttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||| ||  |||||||||||||||||||    
T  17699140 tttcaaccaccacaaggtatttgattttactttatctaaca 17699180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 25890718 - 25890758
Alignment:
Q  30 gctttcaaccaccacaaggaataagattttactttatctaa 70  Q
    ||||||||||||||||| |||||| | ||||||||||||||    
T  25890718 gctttcaaccaccacaaagaataaaactttactttatctaa 25890758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 18682998 - 18682821
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaac-ctgtcgttccgat 120  Q
    ||||||| ||||||| ||| ||||||||| | |||||||||||||||||||| |||||||| ||||||||| |||||||||| | | || |  || || |    
T  18682998 cattactcgctttcagccagcacaaggaaaatgattttactttatctaacatatgcggtagcgagctttgtttgttcctgaaaagctctatgatttcgct 18682899  T
Q  121 cattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataat 197  Q
    ||||| |||| | | ||| ||| | ||||||||||||||||||||||||    |||||| ||||||| ||||||||||    
T  18682898 cattccacaacacctaaatacataagagccatataaggtgaaaaaacgagcatcgcgatctcaaaccacctgcataat 18682821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 17330621 - 17330763
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcat 123  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||| ||| | ||         |||||| |||||||| |    
T  17330621 ttactaactttcaaccaccacaaagaatatgattttactttatctaacatatgcgatagagagctatgtttatt---------cctgtcattccgatcct 17330711  T
Q  124 tcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccg 174  Q
    || |||||| ||||||||| |||||| | ||||| |||||||||||| ||||    
T  17330712 tccacaaaacccaaacacacaggagctaaataagatgaaaaaacgaacgccg 17330763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 12429123 - 12429037
Alignment:
Q  23 attactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacct 109  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||||| || |||| ||||||||||  |||||| || |||||    
T  12429123 attactagctttcaactaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgttggttcctaaataacct 12429037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 13937348 - 13937398
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||||    
T  13937348 cattactagctttcatccaccacaaggaacatgattttactttatctaaca 13937398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 20883522 - 20883472
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  20883522 cattactagctttcaaccaccacaaggtatgtgattttactttatctaaca 20883472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 11462063 - 11462113
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||| ||||    
T  11462063 cattactagctttcaaccaccacaaggtatgtgattttactttatccaaca 11462113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 14373483 - 14373429
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttg 76  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||| |||||||||||    
T  14373483 cattactagcttttaaccaccacaaagaagatgattttactttgtctaacatttg 14373429  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 10929791 - 10929746
Alignment:
Q  27 ctagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  10929791 ctagctttcaaccaccacaaggtatttgattttactttatctaaca 10929746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 17606821 - 17606776
Alignment:
Q  27 ctagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  17606821 ctagctttcaaccaccacaaggtatttgattttactttatctaaca 17606776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 15959306 - 15959247
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggta 81  Q
    |||||||| |||| ||||||||||| ||| | ||||||||||| ||||||||||| ||||    
T  15959306 cattactaacttttaaccaccacaaagaagatgattttactttgtctaacatttgtggta 15959247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 215059 - 215101
Alignment:
Q  30 gctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  215059 gctttcaaccaccacaaggtatttgattttactttatctaaca 215101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 24767916 - 24767846
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgt 92  Q
    |||||| |||||| ||||||||||| ||| | ||||| |||||||||| |||||| || | ||||||||||    
T  24767916 cattacaagcttttaaccaccacaaagaagatgatttcactttatctagcatttgtggcaaagagctttgt 24767846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 32536543 - 32536609
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 88  Q
    ||||| ||||||| |||||||| || ||| | ||||||||||| ||||||||||| |||| ||||||    
T  32536543 cattaatagcttttaaccaccaaaaagaagatgattttactttgtctaacatttgtggtaaagagct 32536609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 33185084 - 33185134
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||||||||| | ||| || || |||||||||||||    
T  33185084 cattactagctttcaaccaccacaaagcatatgaattcactttatctaaca 33185134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 4646550 - 4646500
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  4646550 cattactagctttcaaccaccacaaagaatatgattttactttatctaaca 4646500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 6478167 - 6478292
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacat-----ttgcggtagagagctttgtgtgttcctgaacaacctgtcgttc 116  Q
    ||||| ||||||| | ||||||||||||||| ||||||||||||||||||||      |||||||||||||||||| | || ||||| |  || || |||    
T  6478167 cattattagcttttagccaccacaaggaatatgattttactttatctaacatatgcgatgcggtagagagctttgtctatttctgaaaactctatcattc 6478266  T
Q  117 cgatcattcgacaaaatccaaacaca 142  Q
    || ||| || ||||||||||||||||    
T  6478267 cgctcagtccacaaaatccaaacaca 6478292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 28351376 - 28351424
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  28351376 ttactagctttcaaccaccacaatgaatatgattttactttatctaaca 28351424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 2490860 - 2490910
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  2490860 cattactaactttcagccaccacagggaataagattttactttatctaaca 2490910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 37192419 - 37192369
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  37192419 cattactagctttcaaccaccacaaggtatgtgattttactttatctaaca 37192369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 47623557 - 47623491
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 88  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| |||| ||||||    
T  47623557 cattactagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggtaaagagct 47623491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 16918299 - 16918254
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatcta 69  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  16918299 ttactagctttcaaccaccacaaggtatttgattttactttatcta 16918254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 23635212 - 23635163
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaacat 73  Q
    ||||| ||||||||||||||||  ||||| ||||||||||||||||||||    
T  23635212 ttactcgctttcaaccaccacagagaatatgattttactttatctaacat 23635163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 37297991 - 37297947
Alignment:
Q  22 cattactagctttcaaccaccacaaggaataagattttactttat 66  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||    
T  37297991 cattactagctttcaaccaccacaaggtatgtgattttactttat 37297947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 23713881 - 23713832
Alignment:
Q  24 ttactagctttcaaccaccacaaggaataagattttactttatctaacat 73  Q
    ||||| |||||||||||||| |  ||||| ||||||||||||||||||||    
T  23713881 ttactcgctttcaaccaccatagagaatatgattttactttatctaacat 23713832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 43388024 - 43388065
Alignment:
Q  31 ctttcaaccaccacaaggaataagattttactttatctaaca 72  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  43388024 ctttcaaccaccacaaggtatttgattttactttatctaaca 43388065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 30713363 - 30713323
Alignment:
Q  30 gctttcaaccaccacaaggaataagattttactttatctaa 70  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  30713363 gctttcaaccaccataatgaataatattttactttatctaa 30713323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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