View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_246 (Length: 203)
Name: NF9661A_low_246
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_246 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 18919468 - 18919382
Alignment:
| Q |
16 |
gacatcatgctatggaagaatttcgagtttgcatccccttcacataaccattgcacacgcgataattgccagcaaacactagaatgt |
102 |
Q |
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| T |
18919468 |
gacatcatgctatggaagaatttcgagtttgcatccccttcacataaccattgcactcgcgataattgccaacaaacactagaatgt |
18919382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 18919382 - 18919335
Alignment:
| Q |
124 |
tcatctgaaaaaccatgcaagctttcgacttcctcagccaacaaaaca |
171 |
Q |
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| T |
18919382 |
tcatctgaaaaaccatgcaagctttcgacttcctcagccaacaaaaca |
18919335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 54873381 - 54873455
Alignment:
| Q |
26 |
tatggaagaatttcgagtttgcatccccttcacataaccattgcacacgcgataattgccagcaaacactagaat |
100 |
Q |
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| T |
54873381 |
tatgaaagaatttagaattagcatccccttcacataaccattgcagacgagattgttgccaacaaatactagaat |
54873455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 13155453 - 13155356
Alignment:
| Q |
46 |
gcatccccttcacataaccattgcacacgcgataattgccagcaaacactagaatgtatccgagataaagaaaacaaatcatctgaaaaaccatgcaa |
143 |
Q |
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| T |
13155453 |
gcatccccttcacgtaaccattgcatccgagactgttgccaacaaatactagaatttatctgagacaacgaaaacaactcctcggaaacaccatgcaa |
13155356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 22560773 - 22560731
Alignment:
| Q |
26 |
tatggaagaatttcgagtttgcatccccttcacataaccattg |
68 |
Q |
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| T |
22560773 |
tatgaaagaacttagagtttgcatccccttcacataaccattg |
22560731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 6923499 - 6923425
Alignment:
| Q |
26 |
tatggaagaatttcgagtttgcatccccttcacataaccattgcacacgcgataattgccagcaaacactagaat |
100 |
Q |
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| T |
6923499 |
tatgaaagaaatttgaatttgcacccccttcacataaccattgcagacgtgattgttgccaacaaatactagaat |
6923425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 22531554 - 22531437
Alignment:
| Q |
26 |
tatggaagaatttcgagtttgcatccccttcacataaccattgcacacgcgataattgccagcaaacactagaatgtatccgagataaagaaaacaaatc |
125 |
Q |
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| T |
22531554 |
tatggaagaattttgaattagcatccccttcacgtaaccattgcaaacgagactgttgccaacaaatgcttgaatttacccgggatagagcgaacaactc |
22531455 |
T |
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| Q |
126 |
atctgaaaaaccatgcaa |
143 |
Q |
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| T |
22531454 |
ctctgacaaaccatgcaa |
22531437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 29548101 - 29548218
Alignment:
| Q |
26 |
tatggaagaatttcgagtttgcatccccttcacataaccattgcacacgcgataattgccagcaaacactagaatgtatccgagataaagaaaacaaatc |
125 |
Q |
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| T |
29548101 |
tatggaagaactttgaattaacatccccttcacataaccattgcaagcgagattgttgccaacaaatgctagaatttacccgagatagagcgaacaattc |
29548200 |
T |
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| Q |
126 |
atctgaaaaaccatgcaa |
143 |
Q |
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| T |
29548201 |
ctctaacaaaccatgcaa |
29548218 |
T |
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