View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_248 (Length: 203)

Name: NF9661A_low_248
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_248
NF9661A_low_248
[»] chr8 (14 HSPs)
chr8 (48-178)||(26126711-26126841)
chr8 (23-56)||(3743845-3743878)
chr8 (23-56)||(5754977-5755010)
chr8 (23-56)||(9241626-9241659)
chr8 (23-56)||(26125709-26125742)
chr8 (23-56)||(29800943-29800976)
chr8 (23-56)||(42295269-42295302)
chr8 (25-56)||(2547070-2547101)
chr8 (25-56)||(11582840-11582871)
chr8 (25-56)||(29705436-29705467)
chr8 (25-56)||(31384738-31384769)
chr8 (25-56)||(36743478-36743509)
chr8 (25-56)||(42197430-42197461)
chr8 (23-56)||(20148834-20148867)
[»] chr7 (16 HSPs)
chr7 (13-56)||(35069795-35069838)
chr7 (23-56)||(10573823-10573856)
chr7 (23-56)||(27393253-27393286)
chr7 (25-56)||(5015469-5015500)
chr7 (25-56)||(5810919-5810950)
chr7 (25-56)||(16180352-16180383)
chr7 (25-56)||(24001007-24001038)
chr7 (25-56)||(42538426-42538457)
chr7 (25-56)||(43343619-43343650)
chr7 (25-56)||(44416929-44416960)
chr7 (23-56)||(32029810-32029843)
chr7 (23-56)||(38160572-38160605)
chr7 (20-53)||(41861753-41861786)
chr7 (23-56)||(44326252-44326285)
chr7 (23-56)||(45326094-45326127)
chr7 (21-50)||(47279715-47279744)
[»] chr5 (7 HSPs)
chr5 (23-57)||(5257068-5257102)
chr5 (23-56)||(7617207-7617240)
chr5 (25-56)||(2614644-2614675)
chr5 (25-56)||(18034056-18034087)
chr5 (25-56)||(22512379-22512410)
chr5 (25-56)||(33801543-33801574)
chr5 (25-56)||(41334658-41334689)
[»] chr4 (16 HSPs)
chr4 (23-57)||(27893835-27893869)
chr4 (23-56)||(23036054-23036087)
chr4 (23-56)||(31680976-31681009)
chr4 (25-56)||(33703215-33703246)
chr4 (25-56)||(35017806-35017837)
chr4 (25-56)||(39631175-39631206)
chr4 (25-56)||(43949796-43949827)
chr4 (25-56)||(45490308-45490339)
chr4 (23-56)||(1771259-1771292)
chr4 (23-56)||(23204771-23204804)
chr4 (23-56)||(25051767-25051800)
chr4 (23-56)||(27316706-27316739)
chr4 (23-56)||(27550383-27550416)
chr4 (23-56)||(27864638-27864671)
chr4 (23-52)||(46412462-46412491)
chr4 (23-56)||(55966339-55966372)
[»] chr3 (13 HSPs)
chr3 (23-56)||(24688395-24688428)
chr3 (23-56)||(52629902-52629935)
chr3 (25-56)||(25413755-25413786)
chr3 (25-56)||(36150204-36150235)
chr3 (25-56)||(40480823-40480854)
chr3 (25-56)||(40808939-40808970)
chr3 (25-56)||(42394414-42394445)
chr3 (25-56)||(46941127-46941158)
chr3 (25-56)||(47191021-47191052)
chr3 (25-56)||(53581853-53581884)
chr3 (25-56)||(54237170-54237201)
chr3 (25-56)||(54246143-54246174)
chr3 (23-56)||(45126921-45126954)
[»] chr2 (8 HSPs)
chr2 (23-56)||(12302246-12302279)
chr2 (25-56)||(1750488-1750519)
chr2 (25-56)||(4764721-4764752)
chr2 (25-56)||(19047231-19047262)
chr2 (25-56)||(30838706-30838737)
chr2 (23-56)||(13780728-13780761)
chr2 (23-56)||(43335756-43335789)
chr2 (23-56)||(43490394-43490427)
[»] chr6 (12 HSPs)
chr6 (20-56)||(30014417-30014453)
chr6 (25-56)||(7292821-7292852)
chr6 (25-56)||(9698328-9698359)
chr6 (25-56)||(13743216-13743247)
chr6 (25-56)||(13748716-13748747)
chr6 (25-56)||(21280003-21280034)
chr6 (25-56)||(26466873-26466904)
chr6 (25-56)||(26670004-26670035)
chr6 (23-56)||(7273328-7273361)
chr6 (23-56)||(7367623-7367656)
chr6 (23-56)||(21293670-21293703)
chr6 (23-56)||(30736056-30736089)
[»] scaffold0187 (2 HSPs)
scaffold0187 (25-56)||(14183-14214)
scaffold0187 (25-56)||(24511-24542)
[»] scaffold0119 (1 HSPs)
scaffold0119 (25-56)||(759-790)
[»] scaffold0038 (1 HSPs)
scaffold0038 (25-56)||(112729-112760)
[»] chr1 (8 HSPs)
chr1 (25-56)||(4401402-4401433)
chr1 (25-56)||(5489850-5489881)
chr1 (25-56)||(7447899-7447930)
chr1 (25-56)||(43571081-43571112)
chr1 (25-56)||(48498957-48498988)
chr1 (23-56)||(2497555-2497588)
chr1 (23-56)||(37814852-37814885)
chr1 (25-53)||(23989518-23989546)
[»] scaffold0385 (1 HSPs)
scaffold0385 (26-56)||(11325-11355)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 26126711 - 26126841
Alignment:
Q  48 tgagatgaaacgctaaaaggttacaaacctttctgtactaatgctaaaagatctcttgaatctttaggagtaaattaggcaatgtggatagaacactgct 147  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26126711 tgagaggaaacgccaaaaggttacaaacctttctgtactaatgctaaaagatctcttgaatctttaggagtaaattaggcaatgtggatagaacactgct 26126810  T
Q  148 gtgagtgacattgctcaattattgaagttga 178  Q
    |||||||||||||||||||||||||||||||    
T  26126811 gtgagtgacattgctcaattattgaagttga 26126841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 3743878 - 3743845
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  3743878 ataaatagaagataaagtgtggttgtgagatgaa 3743845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 5755010 - 5754977
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  5755010 ataaatagaagataaagtgtggttgtgagatgaa 5754977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 9241659 - 9241626
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  9241659 ataaatagaagataaagtgtggttgtgagatgaa 9241626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 26125742 - 26125709
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  26125742 ataaatagaagataaagtgtggttgtgagatgaa 26125709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 29800943 - 29800976
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  29800943 ataaatagaagataaagtgtggttgtgagatgaa 29800976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 42295302 - 42295269
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  42295302 ataaatagaagataaagtgtggttgtgagatgaa 42295269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 2547101 - 2547070
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  2547101 aaatagaagataaagtgtggttgtgagatgaa 2547070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 11582871 - 11582840
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  11582871 aaatagaagataaagtgtggttgtgagatgaa 11582840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 29705467 - 29705436
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  29705467 aaatagaagataaagtgtggttgtgagatgaa 29705436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 31384769 - 31384738
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  31384769 aaatagaagataaagtgtggttgtgagatgaa 31384738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 36743478 - 36743509
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  36743478 aaatagaagataaagtgtggttgtgagatgaa 36743509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 42197430 - 42197461
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  42197430 aaatagaagataaagtgtggttgtgagatgaa 42197461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 20148867 - 20148834
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||| ||||||||||||||||||||||||    
T  20148867 ataaatagatgataaagtgtggttgtgagatgaa 20148834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 35069838 - 35069795
Alignment:
Q  13 tggacatcatataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  35069838 tggacctcacataaatagaagataaagtgtggttgtgagatgaa 35069795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 10573856 - 10573823
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  10573856 ataaatagaagataaagtgtggttgtgagatgaa 10573823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 27393253 - 27393286
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  27393253 ataaatagaagataaagtgtggttgtgagatgaa 27393286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 5015500 - 5015469
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  5015500 aaatagaagataaagtgtggttgtgagatgaa 5015469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 5810919 - 5810950
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  5810919 aaatagaagataaagtgtggttgtgagatgaa 5810950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 16180352 - 16180383
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  16180352 aaatagaagataaagtgtggttgtgagatgaa 16180383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 24001007 - 24001038
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  24001007 aaatagaagataaagtgtggttgtgagatgaa 24001038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 42538426 - 42538457
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  42538426 aaatagaagataaagtgtggttgtgagatgaa 42538457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 43343619 - 43343650
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  43343619 aaatagaagataaagtgtggttgtgagatgaa 43343650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 44416929 - 44416960
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  44416929 aaatagaagataaagtgtggttgtgagatgaa 44416960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 32029810 - 32029843
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||||||||||||| |||||||    
T  32029810 ataaatagaagataaagtgtggttgttagatgaa 32029843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 38160572 - 38160605
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||||||| |||||||||||||    
T  38160572 ataaatagaagataaagtgtagttgtgagatgaa 38160605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 41861786 - 41861753
Alignment:
Q  20 catataaatagaagataaagtgtggttgtgagat 53  Q
    |||| |||||||||||||||||||||||||||||    
T  41861786 catacaaatagaagataaagtgtggttgtgagat 41861753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 44326285 - 44326252
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||| ||||||||||||||||||||||||    
T  44326285 ataaatagatgataaagtgtggttgtgagatgaa 44326252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 45326127 - 45326094
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||| ||||||||||||    
T  45326127 ataaatagaagataaagtgtgattgtgagatgaa 45326094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 47279715 - 47279744
Alignment:
Q  21 atataaatagaagataaagtgtggttgtga 50  Q
    ||||||||||||||||||||||||||||||    
T  47279715 atataaatagaagataaagtgtggttgtga 47279744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 5257102 - 5257068
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaaa 57  Q
    |||||||||||||||||||||||||||||||||||    
T  5257102 ataaatagaagataaagtgtggttgtgagatgaaa 5257068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 7617240 - 7617207
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  7617240 ataaatagaagataaagtgtggttgtgagatgaa 7617207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 2614644 - 2614675
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  2614644 aaatagaagataaagtgtggttgtgagatgaa 2614675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 18034087 - 18034056
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  18034087 aaatagaagataaagtgtggttgtgagatgaa 18034056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 22512410 - 22512379
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  22512410 aaatagaagataaagtgtggttgtgagatgaa 22512379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 33801574 - 33801543
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  33801574 aaatagaagataaagtgtggttgtgagatgaa 33801543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 41334658 - 41334689
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  41334658 aaatagaagataaagtgtggttgtgagatgaa 41334689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 27893835 - 27893869
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaaa 57  Q
    |||||||||||||||||||||||||||||||||||    
T  27893835 ataaatagaagataaagtgtggttgtgagatgaaa 27893869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 23036087 - 23036054
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  23036087 ataaatagaagataaagtgtggttgtgagatgaa 23036054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 31681009 - 31680976
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  31681009 ataaatagaagataaagtgtggttgtgagatgaa 31680976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 33703246 - 33703215
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  33703246 aaatagaagataaagtgtggttgtgagatgaa 33703215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 35017837 - 35017806
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  35017837 aaatagaagataaagtgtggttgtgagatgaa 35017806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 39631206 - 39631175
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  39631206 aaatagaagataaagtgtggttgtgagatgaa 39631175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 43949796 - 43949827
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  43949796 aaatagaagataaagtgtggttgtgagatgaa 43949827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 45490308 - 45490339
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  45490308 aaatagaagataaagtgtggttgtgagatgaa 45490339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 1771259 - 1771292
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||| |||||||||||||||||    
T  1771259 ataaatagaagataaaatgtggttgtgagatgaa 1771292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 23204771 - 23204804
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||||||||||||||| |||||    
T  23204771 ataaatagaagataaagtgtggttgtgacatgaa 23204804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 25051800 - 25051767
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||| ||||||||||||    
T  25051800 ataaatagaagataaagtgtgattgtgagatgaa 25051767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 27316706 - 27316739
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||||||||||| |||||||||    
T  27316706 ataaatagaagataaagtgtggttatgagatgaa 27316739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 27550416 - 27550383
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||||||||||||| |||||||    
T  27550416 ataaatagaagataaagtgtggttgtaagatgaa 27550383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 27864671 - 27864638
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||| |||||||||||||||||||||||    
T  27864671 ataaatagaaaataaagtgtggttgtgagatgaa 27864638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 46412462 - 46412491
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgaga 52  Q
    ||||||||||||||||||||||||||||||    
T  46412462 ataaatagaagataaagtgtggttgtgaga 46412491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 55966339 - 55966372
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||| |||||||||||||||||    
T  55966339 ataaatagaagataaattgtggttgtgagatgaa 55966372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 24688395 - 24688428
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  24688395 ataaatagaagataaagtgtggttgtgagatgaa 24688428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 52629935 - 52629902
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  52629935 ataaatagaagataaagtgtggttgtgagatgaa 52629902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 25413786 - 25413755
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  25413786 aaatagaagataaagtgtggttgtgagatgaa 25413755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 36150235 - 36150204
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  36150235 aaatagaagataaagtgtggttgtgagatgaa 36150204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 40480854 - 40480823
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  40480854 aaatagaagataaagtgtggttgtgagatgaa 40480823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 40808970 - 40808939
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  40808970 aaatagaagataaagtgtggttgtgagatgaa 40808939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 42394414 - 42394445
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  42394414 aaatagaagataaagtgtggttgtgagatgaa 42394445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 46941158 - 46941127
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  46941158 aaatagaagataaagtgtggttgtgagatgaa 46941127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 47191021 - 47191052
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  47191021 aaatagaagataaagtgtggttgtgagatgaa 47191052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 53581853 - 53581884
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  53581853 aaatagaagataaagtgtggttgtgagatgaa 53581884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 54237201 - 54237170
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  54237201 aaatagaagataaagtgtggttgtgagatgaa 54237170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 54246143 - 54246174
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  54246143 aaatagaagataaagtgtggttgtgagatgaa 54246174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 45126921 - 45126954
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||| |||||||||||||||||||||||    
T  45126921 ataaatagaaaataaagtgtggttgtgagatgaa 45126954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 12302246 - 12302279
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||||    
T  12302246 ataaatagaagataaagtgtggttgtgagatgaa 12302279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 1750519 - 1750488
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  1750519 aaatagaagataaagtgtggttgtgagatgaa 1750488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 4764721 - 4764752
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  4764721 aaatagaagataaagtgtggttgtgagatgaa 4764752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 19047262 - 19047231
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  19047262 aaatagaagataaagtgtggttgtgagatgaa 19047231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 30838737 - 30838706
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  30838737 aaatagaagataaagtgtggttgtgagatgaa 30838706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 13780728 - 13780761
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||| |||||||||||||||||||||    
T  13780728 ataaatagaagagaaagtgtggttgtgagatgaa 13780761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 43335756 - 43335789
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||||||| |||||||||||||    
T  43335756 ataaatagaagataaagtgtagttgtgagatgaa 43335789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 43490394 - 43490427
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||||||||||| |||||||||    
T  43490394 ataaatagaagataaagtgtggttatgagatgaa 43490427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 30014453 - 30014417
Alignment:
Q  20 catataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30014453 catataaatagaagataaagtatggttgtgagatgaa 30014417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 7292852 - 7292821
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  7292852 aaatagaagataaagtgtggttgtgagatgaa 7292821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 9698328 - 9698359
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  9698328 aaatagaagataaagtgtggttgtgagatgaa 9698359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 13743216 - 13743247
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  13743216 aaatagaagataaagtgtggttgtgagatgaa 13743247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 13748716 - 13748747
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  13748716 aaatagaagataaagtgtggttgtgagatgaa 13748747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 21280034 - 21280003
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  21280034 aaatagaagataaagtgtggttgtgagatgaa 21280003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 26466904 - 26466873
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  26466904 aaatagaagataaagtgtggttgtgagatgaa 26466873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 26670004 - 26670035
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  26670004 aaatagaagataaagtgtggttgtgagatgaa 26670035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 7273328 - 7273361
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||| ||||||||||||    
T  7273328 ataaatagaagataaagtgtgattgtgagatgaa 7273361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 7367656 - 7367623
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||| |||||||||||||||||||||||    
T  7367656 ataaatagaaaataaagtgtggttgtgagatgaa 7367623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 21293670 - 21293703
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||||||||||||||| |||||    
T  21293670 ataaatagaagataaagtgtggttgtgaaatgaa 21293703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 30736089 - 30736056
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||| ||||||||||||    
T  30736089 ataaatagaagataaagtgtgattgtgagatgaa 30736056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 14183 - 14214
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  14183 aaatagaagataaagtgtggttgtgagatgaa 14214  T

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Target: scaffold0187; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 24511 - 24542
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  24511 aaatagaagataaagtgtggttgtgagatgaa 24542  T

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Target: scaffold0119 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 790 - 759
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  790 aaatagaagataaagtgtggttgtgagatgaa 759  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 112760 - 112729
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  112760 aaatagaagataaagtgtggttgtgagatgaa 112729  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 4401433 - 4401402
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  4401433 aaatagaagataaagtgtggttgtgagatgaa 4401402  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 5489881 - 5489850
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  5489881 aaatagaagataaagtgtggttgtgagatgaa 5489850  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 7447930 - 7447899
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  7447930 aaatagaagataaagtgtggttgtgagatgaa 7447899  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 43571081 - 43571112
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  43571081 aaatagaagataaagtgtggttgtgagatgaa 43571112  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 48498957 - 48498988
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  48498957 aaatagaagataaagtgtggttgtgagatgaa 48498988  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 2497555 - 2497588
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    ||||||||| ||||||||||||||||||||||||    
T  2497555 ataaatagatgataaagtgtggttgtgagatgaa 2497588  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 37814885 - 37814852
Alignment:
Q  23 ataaatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||||||||||||||| |||||    
T  37814885 ataaatagaagataaagtgtggttgtgaaatgaa 37814852  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 23989518 - 23989546
Alignment:
Q  25 aaatagaagataaagtgtggttgtgagat 53  Q
    |||||||||||||||||||||||||||||    
T  23989518 aaatagaagataaagtgtggttgtgagat 23989546  T

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Target: scaffold0385 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 11355 - 11325
Alignment:
Q  26 aatagaagataaagtgtggttgtgagatgaa 56  Q
    |||||||||||||||||||||||||||||||    
T  11355 aatagaagataaagtgtggttgtgagatgaa 11325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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