View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_25 (Length: 401)
Name: NF9661A_low_25
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 4322904 - 4322516
Alignment:
| Q |
1 |
ttctaattcacatttttctccttctcattttcattacaatgttatttcagttttgactaaatcacttatttttcattcatttttatcattggatcgtcac |
100 |
Q |
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| T |
4322904 |
ttctaattcacatttttctccttctcattttcattacaatgttatttcagttttgactaaatcacttatgttttattcatttttatcattggatcgtcaa |
4322805 |
T |
|
| Q |
101 |
ttgaacagtattatttggactgtgaaatggaggaggaaagatacgagatattgaaggaccttggttctggaaactttggagtgactaggttggctaaaga |
200 |
Q |
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| T |
4322804 |
ttgaacagtattatttggactgtgaaatggaggaggaaagatacgagatattgaaggaccttggttctggaaactttggagtgactaggttggctaaaga |
4322705 |
T |
|
| Q |
201 |
caagaagacaggagaacttgttgctatcaaatacattgaaagaggatataaggtcacgtatattttcttcatatatcttaattaaataaagcttcatcgt |
300 |
Q |
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| T |
4322704 |
caaaaagacaggagaacttgttgctatcaaatacattgaaagaggatataaggtcaagtatattttcttcatatatcttaattaaataaagcttatgcgt |
4322605 |
T |
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| Q |
301 |
tgcatgtacattttacttgtttgataagaattaatcaaattttttctgctaaataaaaggattaattcgatattttgattttgaatatt |
389 |
Q |
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| T |
4322604 |
tgcatgtacattttacttgtttgataagaattaataaaaaaaattctgctaaataaaaggattaattcgatattctgattttgaatatt |
4322516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 41124398 - 41124498
Alignment:
| Q |
136 |
gaaagatacgagatattgaaggaccttggttctggaaactttggagtgactaggttggctaaagacaagaagacaggagaacttgttgctatcaaataca |
235 |
Q |
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|||||||| ||| ||||||||| |||||||||||||| ||||| || ||||||||||||||||||| || || || |||||||||||| ||||||||| |
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| T |
41124398 |
gaaagatatgagccattgaaggaacttggttctggaaattttggtgttgctaggttggctaaagacaaaaatactggggaacttgttgctctcaaataca |
41124497 |
T |
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| Q |
236 |
t |
236 |
Q |
| |
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| |
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| T |
41124498 |
t |
41124498 |
T |
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