View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_251 (Length: 202)
Name: NF9661A_low_251
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_251 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 33119951 - 33120115
Alignment:
| Q |
38 |
aatataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactcttaaatatacc |
137 |
Q |
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| T |
33119951 |
aatataggatggttggcgatagttggtttagcagtctacataatattcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacacc |
33120050 |
T |
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| Q |
138 |
ctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcatt |
202 |
Q |
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| T |
33120051 |
ctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcatt |
33120115 |
T |
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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 33116784 - 33116880
Alignment:
| Q |
83 |
ttcttttcaccaggaatgggaactgttccatgggttatcaactcttaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaacaa |
179 |
Q |
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| T |
33116784 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaa |
33116880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 21492025 - 21491899
Alignment:
| Q |
72 |
tctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactcttaaatataccctttaaggtatagaggaatatgtggaggaatagc |
171 |
Q |
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| T |
21492025 |
tctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagc |
21491926 |
T |
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| Q |
172 |
atcaacaacagtgtgggtctctaacct |
198 |
Q |
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| T |
21491925 |
atcaacaacagtgtgggtttccaacct |
21491899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 21558576 - 21558479
Alignment:
| Q |
81 |
tattcttttcaccaggaatgggaactgttccatgggttatcaactcttaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaaca |
178 |
Q |
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| T |
21558576 |
tattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
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