View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9661A_low_253 (Length: 201)
Name: NF9661A_low_253
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_253 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 34690822 - 34690981
Alignment:
| Q |
25 |
ttcccttcatcgtttgagcccagaagaaatgcattaaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
124 |
Q |
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| T |
34690822 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
34690921 |
T |
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| Q |
125 |
gtcattattagtatttattagaagttttgatttaatgcatttcctcatcatttttgtttt |
184 |
Q |
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| T |
34690922 |
gtcattattagtatttattagaagttttgatttaatgcatttcctcatcatttttgtttt |
34690981 |
T |
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Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 26988746 - 26988905
Alignment:
| Q |
25 |
ttcccttcatcgtttgagcccagaagaaatgcattaaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
124 |
Q |
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| T |
26988746 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
26988845 |
T |
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| Q |
125 |
gtcattattagtatttattagaagttttgatttaatgcatttcctcatcatttttgtttt |
184 |
Q |
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| T |
26988846 |
gtcataattagtatttattagaagttttgatttaatgcatttcctcatcatttttgtttt |
26988905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 27076513 - 27076447
Alignment:
| Q |
25 |
ttcccttcatcgtttgagcccagaagaaatgcattaaaaaacccatacagattctctagaaggtaat |
91 |
Q |
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| T |
27076513 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaactcatacagattctctagaaggtaat |
27076447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 21432814 - 21432896
Alignment:
| Q |
25 |
ttcccttcatcgtttgagcccagaagaaatgcattaaaaaacccatacagattctctagaaggtaatatgccaaccgatgcacc |
108 |
Q |
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| T |
21432814 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggt-atgtgccaaccaatgcacc |
21432896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 27028074 - 27028130
Alignment:
| Q |
35 |
cgtttgagcccagaagaaatgcattaaaaaacccatacagattctctagaaggtaat |
91 |
Q |
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| T |
27028074 |
cgtttgagctcagaagaaatgcatttaaaaacccatacagattctctagaaggtaat |
27028130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 27099615 - 27099551
Alignment:
| Q |
25 |
ttcccttcatcgtttgagcccagaagaaatgcattaaaaaacccatacagattctctagaaggta |
89 |
Q |
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||||||||||| ||||| |||| |||||||||| | |||||| ||||||||||||||||||||| |
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| T |
27099615 |
ttcccttcatcctttgaacccaaaagaaatgcaattgaaaacctatacagattctctagaaggta |
27099551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 27151628 - 27151687
Alignment:
| Q |
27 |
cccttcatcgtttgagccc-agaagaaatgcattaaaaaacccatacagattctctagaa |
85 |
Q |
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||||||||| ||||||||| |||||||||||||| ||||| | ||||||||||||||||| |
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| T |
27151628 |
cccttcatcatttgagccccagaagaaatgcatttaaaaatctatacagattctctagaa |
27151687 |
T |
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