View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9661A_low_3 (Length: 546)

Name: NF9661A_low_3
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9661A_low_3
NF9661A_low_3
[»] chr3 (3 HSPs)
chr3 (38-528)||(46239893-46240383)
chr3 (46-526)||(23541295-23541775)
chr3 (354-527)||(30038134-30038307)
[»] chr7 (3 HSPs)
chr7 (38-536)||(3437088-3437574)
chr7 (305-430)||(14798952-14799077)
chr7 (305-430)||(15245944-15246069)
[»] chr5 (1 HSPs)
chr5 (351-527)||(29878233-29878409)
[»] chr8 (1 HSPs)
chr8 (369-527)||(3921199-3921357)
[»] chr4 (3 HSPs)
chr4 (351-527)||(6869027-6869201)
chr4 (372-527)||(4497222-4497377)
chr4 (305-418)||(11318291-11318404)
[»] scaffold0300 (1 HSPs)
scaffold0300 (243-527)||(18005-18289)
[»] chr6 (1 HSPs)
chr6 (243-527)||(24676042-24676326)
[»] scaffold0140 (1 HSPs)
scaffold0140 (306-406)||(40053-40153)
[»] chr1 (1 HSPs)
chr1 (424-527)||(36915336-36915439)
[»] scaffold0121 (1 HSPs)
scaffold0121 (305-418)||(43494-43607)
[»] chr2 (1 HSPs)
chr2 (305-418)||(18131561-18131674)


Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 38 - 528
Target Start/End: Original strand, 46239893 - 46240383
Alignment:
Q  38 ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46239893 ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagctaaacagatagctcagaaaattgttgagggtgat 46239992  T
Q  138 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||    
T  46239993 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaatagtgtgagtatcaatgttgataggccagatccag 46240092  T
Q  238 gattacaacccaggtttggatctttttacttttgttttgatggctgcacaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtca 337  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46240093 gattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggttgtca 46240192  T
Q  338 tctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc 437  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240193 tctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc 46240292  T
Q  438 agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaa 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240293 agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaa 46240383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 46 - 526
Target Start/End: Original strand, 23541295 - 23541775
Alignment:
Q  46 tggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattg 145  Q
    |||||||||||||||| || |||||||||||||| || |  |||||||| ||||| ||||||||||| |||||||  |||||||| |||||||||||| |    
T  23541295 tggatgacatgaggacaaaccatgcagtgggtattacaatgggtagggcttggaaggcaaaacagattgctcagagtattgttgatggtgatgctgatag 23541394  T
Q  146 tcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaa 245  Q
     |||||  | |||||  |||| |||||||| ||||||||||| |||  | ||||||| |  ||||  || | ||| ||||| |||   |||  | | |||    
T  23541395 gcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaa 23541494  T
Q  246 cccaggtttggatctttttacttttgttttgatggctgcacaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaaga 345  Q
    ||||||||||| ||||| |||||||||||||||||||| |  ||||| || |  ||||| ||||| |||||| ||||||| ||||| |||||| ||||||    
T  23541495 cccaggtttggttctttctacttttgttttgatggctgtaagaaaggtttcatcaatgggtgtagaccatttgttggggtagatggatgtcatttaaaga 23541594  T
Q  346 caaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaag 445  Q
    ||||||||||||||||||| || || | ||||||||| |||||||||||||| || |||||  | |||||||| || || |||||  |||| |||| |||    
T  23541595 caaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatattttccattggcatttggaatagtagaaacaaagtgtagggaaag 23541694  T
Q  446 ctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggt 526  Q
    |||||| |||||||||||| |  |  ||||||||||||| |  ||||  |||||||| |||||||||||||| ||||||||    
T  23541695 ctggaaatggttcatggagcttttaatggatgacattggaagggataggagatatgtcttcatatcagatcaacagaaggt 23541775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 354 - 527
Target Start/End: Complemental strand, 30038307 - 30038134
Alignment:
Q  354 gggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagt 453  Q
    |||||||||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||  ||||| |    
T  30038307 gggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttggaaat 30038208  T
Q  454 ggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 527  Q
    |||||| | |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  30038207 ggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta 30038134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 38 - 536
Target Start/End: Complemental strand, 3437574 - 3437088
Alignment:
Q  38 ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat 137  Q
    ||||||||| |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  3437574 ggacatcatcgatgacatgaggacgaatcatgcagtgggta------------gggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat 3437487  T
Q  138 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  3437486 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagtgtgagtatcaatgttgataggccagatccag 3437387  T
Q  238 gattacaacccaggtttggatctttttacttttgttttgatggctgcacaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtca 337  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437386 gattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtca 3437287  T
Q  338 tctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc 437  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437286 tctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc 3437187  T
Q  438 agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaagtgatgtc 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3437186 agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaagtgttgtc 3437088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 430
Target Start/End: Complemental strand, 14799077 - 14798952
Alignment:
Q  305 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 404  Q
    |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |  |  | ||||| || ||||| |||||||| || ||||||    
T  14799077 atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt 14798978  T
Q  405 cctcttgcatttggcattgttgaaac 430  Q
    ||| | || |||||  ||||||||||    
T  14798977 cctttagcttttggtgttgttgaaac 14798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 430
Target Start/End: Complemental strand, 15246069 - 15245944
Alignment:
Q  305 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 404  Q
    |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |  |  | ||||| || ||||| |||||||| || ||||||    
T  15246069 atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt 15245970  T
Q  405 cctcttgcatttggcattgttgaaac 430  Q
    ||| | || |||||  ||||||||||    
T  15245969 cctttagcttttggtgttgttgaaac 15245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 351 - 527
Target Start/End: Original strand, 29878233 - 29878409
Alignment:
Q  351 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 450  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  29878233 tatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 29878332  T
Q  451 agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 527  Q
    | ||||||||  |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  29878333 aatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 29878409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 369 - 527
Target Start/End: Complemental strand, 3921357 - 3921199
Alignment:
Q  369 attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc 468  Q
    |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||| ||||||||  ||||||    
T  3921357 attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc 3921258  T
Q  469 tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 527  Q
    || |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  3921257 tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 3921199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 351 - 527
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
Q  351 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 450  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||||||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  6869027 tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 6869126  T
Q  451 agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 527  Q
    | ||||||||| |||||||| |||| || || ||  |||||  |||| |||| |||||||||||||| || ||||||    
T  6869127 aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta 6869201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 527
Target Start/End: Complemental strand, 4497377 - 4497222
Alignment:
Q  372 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 471  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||  |||  | | |||||||||||| ||||| |||||| || ||     
T  4497377 gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggcaagctggaaatggtttatggagctgttga 4497278  T
Q  472 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 527  Q
    || ||||||| || || |||||||||||||| |||||||||||||| |||||||||    
T  4497277 tgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta 4497222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 418
Target Start/End: Complemental strand, 11318404 - 11318291
Alignment:
Q  305 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 404  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||  |||||||||||||| || || |||    
T  11318404 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatatttt 11318305  T
Q  405 cctcttgcatttgg 418  Q
    ||| | ||||||||    
T  11318304 cctttagcatttgg 11318291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 243 - 527
Target Start/End: Original strand, 18005 - 18289
Alignment:
Q  243 caacccaggtttggatctttttacttttgttttgatggctgcacaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 342  Q
    |||||||| ||||| ||||| |||||||  |||||||||||||  | |||||| | |  || |||||| || ||| | ||||| ||||| || ||| | |    
T  18005 caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga 18104  T
Q  343 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 442  Q
    | || || ||||| || ||||| ||  | |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||    
T  18105 aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggc 18204  T
Q  443 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 527  Q
    ||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  18205 aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 18289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 243 - 527
Target Start/End: Complemental strand, 24676326 - 24676042
Alignment:
Q  243 caacccaggtttggatctttttacttttgttttgatggctgcacaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 342  Q
    |||||||| ||||| ||||| |||||||  |||||||||||||  | |||||| | |  || |||||| || ||| | ||||| ||||| || ||| | |    
T  24676326 caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga 24676227  T
Q  343 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 442  Q
    | || || ||||| || ||||| ||  | |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||    
T  24676226 aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggc 24676127  T
Q  443 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 527  Q
    ||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  24676126 aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 24676042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
Q  306 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 405  Q
    |||||||| ||||| || |||||||| |||||||| ||||| |||||||| |||   ||  | |||| ||||||||||||||||||||||||||| ||||    
T  40153 tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc 40054  T
Q  406 c 406  Q
    |    
T  40053 c 40053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 527
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
Q  424 ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa 523  Q
    ||||||||||||||| || ||| ||||| ||||||||| |||||||  |||| || || ||  ||||||| |||||||| |||||||||||||| || ||    
T  36915336 ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa 36915435  T
Q  524 ggta 527  Q
    ||||    
T  36915436 ggta 36915439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 418
Target Start/End: Original strand, 43494 - 43607
Alignment:
Q  305 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 404  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  43494 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 43593  T
Q  405 cctcttgcatttgg 418  Q
    ||| | ||||||||    
T  43594 cctttagcatttgg 43607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 418
Target Start/End: Complemental strand, 18131674 - 18131561
Alignment:
Q  305 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 404  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  18131674 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 18131575  T
Q  405 cctcttgcatttgg 418  Q
    ||| | ||||||||    
T  18131574 cctttagcatttgg 18131561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University