View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9661A_low_32 (Length: 375)
Name: NF9661A_low_32
Description: NF9661A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9661A_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 28 - 373
Target Start/End: Complemental strand, 46834300 - 46833949
Alignment:
| Q |
28 |
gctttgtacctattatggtgttaaataggtcaaaagattaagcactactacataaattatgtctatcaagagaaa----ccatgttagaatcaagtaggg |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46834300 |
gctttgtacctattatggtgttaaataggtcaaaagattaagcactactacataaattatgtctatcaagagaaattaaccatgttagaatcaagtaggg |
46834201 |
T |
|
| Q |
124 |
ccttgtgaaccatacaagagacaaaaatcccaggatatctatattttccattcacaaacactcatttgaaaacaacataggaaactatttgagagtcctt |
223 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46834200 |
ccttgtgaaccatacaagagacaaaagtcccaggatatctatattttccattcacaaacactcatttgaaaacaacataggaaactatttgagagtcctt |
46834101 |
T |
|
| Q |
224 |
atgacaagacataaattgtttttattttattttcctacactctctg--nnnnnnnnnnnnngcatatcaaaaacattttatagattatatgaaggaaaag |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46834100 |
atgacaagacataaattgtttttattttattttcctacactctctgatatatatatatatagtatatcaaaaacagtttatagattatatgaaggaaaaa |
46834001 |
T |
|
| Q |
322 |
ctttgactttattttatcttttactatataataagtgattattatttaagcc |
373 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
46834000 |
ctttgactttattttatcttttactatttaataagtgattataatttaagcc |
46833949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 40356857 - 40356825
Alignment:
| Q |
320 |
agctttgactttattttatcttttactatataa |
352 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
40356857 |
agctttgactttattttatcttttattatataa |
40356825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University